Detail Information

Basic Information:


  VIRBase ID:  

VHID00201705

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H9-5p:           YIF1B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H9-5p YIF1B
miRBase
Accession/Entrez ID		 MIMAT0015376 90522
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - FinGER8//KABAMAS

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR YIF1B
chr19:38802655(-) A-I      intronic
chr19:38804959(-) A-I      intronic
chr19:38805100(-) A-I      intronic
chr19:38804734(-) A-I      intronic
chr19:38805299(-) A-I      intronic
chr19:38805227(-) A-I      intronic
chr19:38805114(-) A-I      intronic
chr19:38805048(-) A-I      intronic
chr19:38804967(-) A-I      intronic
chr19:38804895(-) A-I      intronic
chr19:38804804(-) A-I      intronic
chr19:38804771(-) A-I      intronic
chr19:38802532(-) A-I      intronic
chr19:38804731(-) A-I      intronic
chr19:38804678(-) A-I      intronic
chr19:38804083(-) A-I      intronic
chr19:38803729(-) A-I      intronic
chr19:38803703(-) A-I      intronic
chr19:38804009(-) A-I      intronic
chr19:38803888(-) A-I      intronic
chr19:38803873(-) A-I      intronic
chr19:38802881(-) A-I      intronic
chr19:38803664(-) A-I      intronic
chr19:38803644(-) A-I      intronic
chr19:38805822(-) A-I      intronic
chr19:38805884(-) A-I      intronic
chr19:38802705(-) A-I      intronic
chr19:38802717(-) A-I      intronic
chr19:38803767(-) A-I      intronic
chr19:38802674(-) A-I      intronic
chr19:38802650(-) A-I      intronic
chr19:38802637(-) A-I      intronic
chr19:38802625(-) A-I      intronic
chr19:38802615(-) A-I      intronic
chr19:38803639(-) A-I      intronic
chr19:38802571(-) A-I      intronic
chr19:38802545(-) A-I      intronic
chr19:38797008(-) A-I      intronic
chr19:38797003(-) A-I      intronic
chr19:38796996(-) A-I      intronic
chr19:38796694(-) A-I      intronic
chr19:38796676(-) A-I      intronic
chr19:38803793(-) A-I      intronic
chr19:38803768(-) A-I      intronic
chr19:38803762(-) A-I      intronic
chr19:38803760(-) A-I      intronic
chr19:38803759(-) A-I      intronic
chr19:38803732(-) A-I      intronic
chr19:38804742(-) A-I      intronic
chr19:38805534(-) A-I      intronic
chr19:38805398(-) A-I      intronic
chr19:38805369(-) A-I      intronic
chr19:38805350(-) A-I      intronic
chr19:38805346(-) A-I      intronic
chr19:38803756(-) A-I      intronic
chr19:38805108(-) A-I      intronic
chr19:38805133(-) A-I      intronic
chr19:38801770(-) A-I      intronic
chr19:38802495(-) A-I      intronic
chr19:38802473(-) A-I      intronic
chr19:38796600(-) A-I      intronic
chr19:38805076(-) A-I      intronic
chr19:38802557(-) A-I      intronic
chr19:38802829(-) A-I      intronic
chr19:38805654(-) A-I      intronic
chr19:38804733(-) A-I      intronic
chr19:38804902(-) A-I      intronic
chr19:38805773(-) A-I      intronic
chr19:38797012(-) A-I      intronic
chr19:38803659(-) A-I      intronic
chr19:38796781(-) A-I      intronic
chr19:38805716(-) A-I      intronic
chr19:38801832(-) A-I      intronic
chr19:38805391(-) A-I      intronic
chr19:38801913(-) A-I      intronic
chr19:38805640(-) A-I      intronic
chr19:38804803(-) A-I      intronic
chr19:38804037(-) A-I      intronic
chr19:38805175(-) A-I      intronic
chr19:38805431(-) A-I      intronic
chr19:38805696(-) A-I      intronic
chr19:38797078(-) A-I      intronic
chr19:38801921(-) A-I      intronic
chr19:38802574(-) A-I      intronic
chr19:38803624(-) A-I      intronic
chr19:38805339(-) A-I      intronic
chr19:38802819(-) A-I      intronic
chr19:38802482(-) A-I      intronic
chr19:38805833(-) A-I      intronic
chr19:38804758(-) A-I      intronic
chr19:38805226(-) A-I      intronic
chr19:38804171(-) A-I      intronic
chr19:38797097(-) A-I      intronic
chr19:38802945(-) A-I      intronic
chr19:38805846(-) A-I      intronic
chr19:38801779(-) A-I      intronic
chr19:38805528(-) A-I      intronic
chr19:38802971(-) A-I      intronic
chr19:38805051(-) A-I      intronic
chr19:38802513(-) A-I      intronic
chr19:38805392(-) A-I      intronic
chr19:38804931(-) A-I      intronic
chr19:38805356(-) A-I      intronic
chr19:38804872(-) A-I      intronic
chr19:38804762(-) A-I      intronic
chr19:38804794(-) A-I      intronic
chr19:38805212(-) A-I      intronic
chr19:38803765(-) A-I      intronic
chr19:38805655(-) A-I      intronic
chr19:38801881(-) A-I      intronic
chr19:38797039(-) A-I      intronic
chr19:38802474(-) A-I      intronic
chr19:38797083(-) A-I      intronic
chr19:38802904(-) A-I      intronic
chr19:38804774(-) A-I      intronic
chr19:38805665(-) A-I      intronic
chr19:38802981(-) A-I      intronic
chr19:38802935(-) A-I      intronic
chr19:38805480(-) A-I      intronic
chr19:38805005(-) A-I      intronic
chr19:38802807(-) A-I      intronic
chr19:38805731(-) A-I      intronic
chr19:38803730(-) A-I      intronic
chr19:38803864(-) A-I      intronic
chr19:38805859(-) A-I      intronic
chr19:38796787(-) A-I      intronic
chr19:38802962(-) A-I      intronic
chr19:38797016(-) A-I      intronic
chr19:38801818(-) A-I      intronic
chr19:38802493(-) A-I      intronic
chr19:38797577(-) A-I      Syn:Gly->Gly
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED YIF1B
chr19:38803652(-) A-I intron -    22327324
chr19:38804708(-) A-I intron -    22327324
chr19:38805356(-) A-I intron -    22327324
chr19:38805392(-) A-I intron -    22327324
chr19:38805833(-) A-I intron -    22327324
chr19:38796925(-) A-G intron -    22484847
chr19:38796990(-) A-G intron -    22484847
chr19:38797097(-) A-G intron -    22484847
chr19:38801818(-) A-G intron -    22484847
chr19:38801832(-) A-G intron -    22484847
chr19:38802474(-) A-G intron -    22484847
chr19:38802494(-) A-G intron -    22484847
chr19:38802513(-) A-G intron -    22484847
chr19:38802517(-) A-G intron -    22484847
chr19:38802829(-) A-G intron -    22484847
chr19:38802945(-) A-G intron -    22484847
chr19:38803652(-) A-G intron -    22484847
chr19:38803657(-) A-G intron -    22484847
chr19:38803720(-) A-G intron -    22484847
chr19:38803730(-) A-G intron -    22484847
chr19:38803838(-) A-G intron -    22484847
chr19:38804758(-) A-G intron -    22484847
chr19:38804973(-) A-G intron -    22484847
chr19:38805062(-) A-G intron -    22484847
chr19:38805392(-) A-G intron -    22484847
chr19:38805480(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase YIF1B
chr19:38795748-38795749(-) m6A 3'UTR       -
chr19:38795769-38795770(-) m6A 3'UTR//exon       24981863
chr19:38795776-38795777(-) m6A 3'UTR//exon       24981863
chr19:38795931-38795932(-) m6A 3'UTR//exon       24284625//27773536
chr19:38795977-38795978(-) m6A 3'UTR//exon       24284625//27773536
chr19:38796076-38796077(-) m6A 3'UTR//CDS//exon       27773536
chr19:38806108-38806109(-) m6A exon//intron       24981863
chr19:38806168-38806169(-) m6A exon//intron       24981863
chr19:38806295-38806296(-) m6A exon//intron       24981863//27773535
chr19:38806305-38806306(-) m6A exon//intron       24981863//27773535
chr19:38806393-38806394(-) m6A 5'UTR//exon//intron       24981863
chr19:38806584-38806585(-) m6A 5'UTR//intron       24981863
chr19:38807828-38807829(-) m6A 5'UTR       -
chr19:38807851-38807852(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate YIF1B
Chromatin K562 cells     -
Cytosol HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H9-5p
Interactor2: YIF1B

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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