Basic Information:

  VIRBase ID:  

VHID00198248

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H7-3p:  MIMAT0015375          FGF13:  NM_001139501     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H7-3p	FGF13
miRBase Accession/Entrez ID	MIMAT0015375	2258
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DEE90//FGF-13//FGF2//FHF-2//FHF2//LINC00889

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FGF13	chrX:138201296(-) A-I      intronic chrX:138201293(-) A-I      intronic chrX:138200992(-) A-I      intronic chrX:138173098(-) A-I      intronic chrX:138143987(-) A-I      intronic chrX:138143978(-) A-I      intronic chrX:138143974(-) A-I      intronic chrX:138143971(-) A-I      intronic chrX:138009058(-) A-I      intronic chrX:137722071(-) A-I      intronic chrX:137722054(-) A-I      intronic chrX:138166260(-) A-I      intronic chrX:138201304(-) A-I      intronic chrX:138166319(-) A-I      intronic chrX:138166298(-) A-I      intronic chrX:138166287(-) A-I      intronic chrX:138166270(-) A-I      intronic chrX:138143998(-) A-I      intronic chrX:138213804(-) A-I      intronic chrX:138216948(-) A-I      intronic chrX:138173021(-) A-I      intronic chrX:138173042(-) A-I      intronic chrX:138173020(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FGF13	chrX:137714583-137714584(-) m6A 3'UTR       27773535 chrX:137714618-137714619(-) m6A 3'UTR       27773535 chrX:137714623-137714624(-) m6A 3'UTR       27773535 chrX:137714628-137714629(-) m6A 3'UTR       27773535 chrX:137714637-137714638(-) m6A 3'UTR       24981863//27773535 chrX:137714657-137714658(-) m6A 3'UTR       24981863//27773535 chrX:137714768-137714769(-) m6A 3'UTR       24981863//27773535 chrX:137714786-137714787(-) m6A 3'UTR       24981863//27773535 chrX:137714976-137714977(-) m6A 3'UTR       27773535 chrX:137739887-137739888(-) Gm intron       16381836 chrX:137739888-137739889(-) Gm intron       16381836 chrX:137793212-137793213(-) m6A 5'UTR//intron       25456834//27773536 chrX:137793244-137793245(-) m6A 5'UTR//intron       25456834//27773536 chrX:137793251-137793252(-) m6A 5'UTR//intron       25456834//27773536 chrX:137793273-137793274(-) m6A 5'UTR//intron       25456834//27773536 chrX:137793365-137793366(-) m6A 5'UTR//intron       25456834//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv2-miR-H7-3p	Exosome K562 cells     24460325
	FGF13	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H7-3p
Interactor2: FGF13

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg