Basic Information:

  VIRBase ID:  

VHID00197763

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H25:  MIMAT0014708          CKLF:  NM_181641     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H25	CKLF
miRBase Accession/Entrez ID	MIMAT0014708	51192
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C32//CKLF1//CKLF2//CKLF3//CKLF4//HSPC224//UCK-1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CKLF	chr16:66596808(+) A-I      intronic chr16:66596162(+) A-I      intronic chr16:66586934(+) A-I      intronic chr16:66588883(+) A-I      intronic chr16:66588905(+) A-I      intronic chr16:66588976(+) A-I      intronic chr16:66591260(+) A-I      intronic chr16:66591261(+) A-I      intronic chr16:66591985(+) A-I      intronic chr16:66588884(+) A-I      intronic chr16:66591097(+) A-I      intronic chr16:66591171(+) A-I      intronic chr16:66596880(+) A-I      intronic chr16:66591200(+) A-I      intronic chr16:66589124(+) A-I      intronic chr16:66588966(+) A-I      intronic chr16:66596173(+) A-I      intronic chr16:66591110(+) A-I      intronic chr16:66596172(+) A-I      intronic chr16:66591939(+) A-I      intronic chr16:66588929(+) A-I      intronic chr16:66588981(+) A-I      intronic chr16:66596231(+) A-I      intronic chr16:66589084(+) A-I      intronic chr16:66589091(+) A-I      intronic chr16:66589072(+) A-I      intronic chr16:66591124(+) A-I      intronic chr16:66588897(+) A-I      intronic chr16:66588990(+) A-I      intronic chr16:66589020(+) A-I      intronic chr16:66588951(+) A-I      intronic chr16:66596052(+) A-I      intronic chr16:66591332(+) A-I      intronic chr16:66596170(+) A-I      intronic chr16:66589029(+) A-I      intronic chr16:66586988(+) A-I      intronic chr16:66591210(+) A-I      intronic chr16:66591345(+) A-I      intronic chr16:66591958(+) A-I      intronic chr16:66587043(+) A-I      intronic chr16:66587038(+) A-I      intronic chr16:66589123(+) A-I      intronic chr16:66596845(+) A-I      intronic chr16:66591251(+) A-I      intronic chr16:66589055(+) A-I      intronic chr16:66588910(+) A-I      intronic chr16:66589122(+) A-I      intronic chr16:66591254(+) A-I      intronic chr16:66589095(+) A-I      intronic chr16:66596169(+) A-I      intronic chr16:66588906(+) A-I      intronic chr16:66596674(+) A-I      intronic chr16:66586936(+) A-I      intronic chr16:66596763(+) A-I      intronic chr16:66598513(+) A-I      intronic chr16:66591974(+) A-I      intronic chr16:66588950(+) A-I      intronic chr16:66591305(+) A-I      intronic chr16:66596178(+) A-I      intronic chr16:66589019(+) A-I      intronic chr16:66591104(+) A-I      intronic chr16:66589089(+) A-I      intronic chr16:66596117(+) A-I      intronic chr16:66591991(+) A-I      intronic chr16:66596704(+) A-I      intronic chr16:66596186(+) A-I      intronic chr16:66591920(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CKLF	chr16:66586554-66586555(+) m6A 5'UTR//exon       24284625//25456834//24981863//22575960 chr16:66586644-66586645(+) m6A CDS//exon       24284625//25456834//24981863//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv2-miR-H25	Exosome K562 cells     24460325
	CKLF	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H25
Interactor2: CKLF

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg