Basic Information:

  VIRBase ID:  

VHID00197762

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H25:  MIMAT0014708          SDF4:  NM_016176     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H25	SDF4
miRBase Accession/Entrez ID	MIMAT0014708	51150
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	Cab45//SDF-4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SDF4	chr1:1160217(-) A-I      intronic chr1:1160164(-) A-I      intronic chr1:1160034(-) A-I      intronic chr1:1156882(-) A-I      intronic chr1:1160172(-) A-I      intronic chr1:1159932(-) A-I      intronic chr1:1157467(-) A-I      intronic chr1:1156878(-) A-I      intronic chr1:1156897(-) A-I      intronic chr1:1159798(-) A-I      intronic chr1:1157235(-) A-I      intronic chr1:1156910(-) A-I      intronic chr1:1160098(-) A-I      intronic chr1:1156906(-) A-I      intronic chr1:1157460(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SDF4	chr1:1156882(-) A-I intron -    22327324 chr1:1157460(-) A-I intron -    22327324 chr1:1157960(-) A-I intron -    21960545 chr1:1156897(-) A-G intron -    22484847 chr1:1156910(-) A-G intron -    22484847 chr1:1159798(-) A-G intron -    22484847 chr1:1160098(-) A-G intron -    22484847 chr1:1157460(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SDF4	chr1:1152462-1152463(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27773536//22575960//22608085 chr1:1152489-1152490(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27773536//22575960//22608085 chr1:1152512-1152513(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27773536//22575960//22608085 chr1:1152558-1152559(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27773536//22575960//22608085 chr1:1152808-1152809(-) m6A 3'UTR//exon       24284625//24209618//24981863//27371828//27773536//22575960 chr1:1152922-1152923(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536//22575960 chr1:1152988-1152989(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536 chr1:1152994-1152995(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536 chr1:1153057-1153058(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536 chr1:1153907-1153908(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//27773536 chr1:1153931-1153932(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//27773536 chr1:1153946-1153947(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//26404942//27773535//27371828//27773536 chr1:1154012-1154013(-) m6A CDS//exon       24284625//27773535//27371828//27773536//22575960 chr1:1154106-1154107(-) m6A exon//intron       24284625//27773535//27371828//27773536//22575960 chr1:1154113-1154114(-) m6A exon//intron       24284625//27773535//27371828//27773536//22575960 chr1:1154153-1154154(-) m6A CDS//exon       24284625//27773535//27371828//27773536//22575960 chr1:1154246-1154247(-) m6A CDS//exon       24284625//25456834//27773535//27371828//27773536//22575960 chr1:1154261-1154262(-) m6A CDS//exon       24284625//25456834//28052920//27773535//27371828//27773536//22575960 chr1:1154279-1154280(-) m6A CDS//exon       24284625//25456834//28052920//27773535//27371828//27773536//22575960 chr1:1154288-1154289(-) m6A CDS//exon       24284625//25456834//28052920//27773535//27371828//27773536//22575960 chr1:1154369-1154370(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//27371828//27773536 chr1:1155062-1155063(-) m6A exon//intron       - chr1:1155097-1155098(-) m6A exon//intron       - chr1:1155159-1155160(-) m6A exon//intron       - chr1:1158642-1158643(-) m6A CDS       24284625//24981863//27773535//22575960 chr1:1159225-1159226(-) m6A CDS       24284625//24981863//27773535//27371828//27773536//22575960 chr1:1159244-1159245(-) m6A CDS       24284625//24981863//27773535//27371828//27773536//22575960 chr1:1159336-1159337(-) m6A CDS       24284625//24981863//27773535//27371828//27773536//22575960 chr1:1162653-1162654(-) m6A exon//intron       24284625//24981863//27773535//27371828//27773536//22575960 chr1:1163916-1163917(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr1:1163994-1163995(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr1:1164241-1164242(-) m6A 5'UTR//exon       24284625//25456834//27773535//27371828//27773536//22575960 chr1:1164285-1164286(-) m6A 5'UTR//exon       24284625//25456834//24981863//27773535//27371828//27773536//22575960 chr1:1167274-1167275(-) m6A 5'UTR//exon       24284625//25456834//24981863//27773535//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv2-miR-H25	Exosome K562 cells     24460325
	SDF4	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H25
Interactor2: SDF4

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid
Support Database	VmiReg