Basic Information:

  VIRBase ID:  

VHID00197734

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H25:  MIMAT0014708          NSMF:  NM_001178064     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H25	NSMF
miRBase Accession/Entrez ID	MIMAT0014708	26012
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HH9//NELF

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NSMF	chr9:140342520-140342521(-) m6A 3'UTR       24284625 chr9:140342547-140342548(-) m6A 3'UTR       24284625 chr9:140342905-140342906(-) m6A 3'UTR//intron       24284625//24981863 chr9:140342926-140342927(-) m6A 3'UTR//intron       24981863 chr9:140342954-140342955(-) m6A 3'UTR//intron       24981863 chr9:140343155-140343156(-) Cm 3'UTR//intron       - chr9:140343179-140343180(-) m6A 3'UTR//intron       - chr9:140343196-140343197(-) m6A 3'UTR//intron       - chr9:140343371-140343372(-) Y 3'UTR//intron       26075521 chr9:140343399-140343400(-) m6A 3'UTR//intron       - chr9:140343506-140343507(-) m6A 3'UTR//intron       - chr9:140343761-140343762(-) m6A 3'UTR//intron       24284625//25456834//24981863//28052920//27371828//22575960//22608085 chr9:140343793-140343794(-) m6A 3'UTR//intron       24284625//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr9:140343864-140343865(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr9:140344107-140344108(-) m6A CDS//exon       27371828 chr9:140344115-140344116(-) m6A CDS//exon       27371828 chr9:140344390-140344391(-) m6A CDS//exon       27371828 chr9:140344438-140344439(-) m6A CDS//exon       27371828 chr9:140344636-140344637(-) m6A CDS//exon       27371828 chr9:140346951-140346952(-) m6A 3'UTR//intron       24284625 chr9:140347012-140347013(-) m6A 3'UTR//CDS//exon       24284625 chr9:140347036-140347037(-) m6A 3'UTR//CDS//exon       24284625 chr9:140347571-140347572(-) m6A 5'UTR//CDS//exon       24284625 chr9:140347577-140347578(-) m6A 5'UTR//CDS//exon       24284625 chr9:140347583-140347584(-) m6A 5'UTR//CDS//exon       24284625 chr9:140348126-140348127(-) m6A 5'UTR//intron       - chr9:140348133-140348134(-) m6A 5'UTR//intron       - chr9:140348184-140348185(-) m6A 5'UTR//CDS//exon//intron       27773536 chr9:140348882-140348883(-) m6A 5'UTR//CDS//exon       27773536 chr9:140348892-140348893(-) m6A 5'UTR//CDS       27773536 chr9:140351912-140351913(-) m6A 5'UTR//CDS       27371828//27773536 chr9:140351932-140351933(-) m6A 5'UTR//CDS       27371828//27773536 chr9:140352286-140352287(-) m6A CDS       24284625//27371828//27773536 chr9:140352953-140352954(-) m6A CDS       24284625//27371828//27773536 chr9:140353663-140353664(-) m6A 5'UTR       24209618//27371828//27773536 chr9:140353721-140353722(-) m6A 5'UTR       24209618//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv2-miR-H25	Exosome K562 cells     24460325
	NSMF	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome-free cytosol Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H25
Interactor2: NSMF

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg