Basic Information:

  VIRBase ID:  

VHID00197642

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H25:  MIMAT0014708          PICK1:  NM_001039583     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H25	PICK1
miRBase Accession/Entrez ID	MIMAT0014708	9463
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PICK//PRKCABP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PICK1	chr22:38459703(+) A-I      intronic chr22:38459709(+) A-I      intronic chr22:38459724(+) A-I      intronic chr22:38454935(+) A-I      intronic chr22:38455943(+) A-I      intronic chr22:38457153(+) A-I      intronic chr22:38457187(+) A-I      intronic chr22:38457192(+) A-I      intronic chr22:38455965(+) A-I      intronic chr22:38455966(+) A-I      intronic chr22:38456067(+) A-I      intronic chr22:38456089(+) A-I      intronic chr22:38456147(+) A-I      intronic chr22:38456152(+) A-I      intronic chr22:38456775(+) A-I      intronic chr22:38456825(+) A-I      intronic chr22:38456830(+) A-I      intronic chr22:38460145(+) A-I      intronic chr22:38460126(+) A-I      intronic chr22:38460088(+) A-I      intronic chr22:38459811(+) A-I      intronic chr22:38459797(+) A-I      intronic chr22:38457269(+) A-I      intronic chr22:38454920(+) A-I      intronic chr22:38459776(+) A-I      intronic chr22:38459767(+) A-I      intronic chr22:38459749(+) A-I      intronic chr22:38457254(+) A-I      intronic chr22:38457228(+) A-I      intronic chr22:38460634(+) A-I      intronic chr22:38459743(+) A-I      intronic chr22:38457209(+) A-I      intronic chr22:38459729(+) A-I      intronic chr22:38459719(+) A-I      intronic chr22:38459355(+) A-I      intronic chr22:38459187(+) A-I      intronic chr22:38459183(+) A-I      intronic chr22:38457626(+) A-I      intronic chr22:38457557(+) A-I      intronic chr22:38460822(+) A-I      intronic chr22:38456990(+) A-I      intronic chr22:38460836(+) A-I      intronic chr22:38457293(+) A-I      intronic chr22:38460621(+) A-I      intronic chr22:38460613(+) A-I      intronic chr22:38460608(+) A-I      intronic chr22:38460537(+) A-I      intronic chr22:38457227(+) A-I      intronic chr22:38456064(+) A-I      intronic chr22:38455959(+) A-I      intronic chr22:38457292(+) A-I      intronic chr22:38460604(+) A-I      intronic chr22:38456857(+) A-I      intronic chr22:38457671(+) A-I      intronic chr22:38457665(+) A-I      intronic chr22:38457024(+) A-I      intronic chr22:38459681(+) A-I      intronic chr22:38456062(+) A-I      intronic chr22:38456897(+) A-I      intronic chr22:38456991(+) A-I      intronic chr22:38460299(+) A-I      intronic chr22:38459762(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PICK1	chr22:38465067(+) T-G exon CDS    21725310

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PICK1	chr22:38453383-38453384(+) m6A 5'UTR//exon       24981863 chr22:38453470-38453471(+) m6A 5'UTR//exon//intron       24284625//24981863 chr22:38453483-38453484(+) m6A 5'UTR//exon//intron       24284625//24981863 chr22:38453530-38453531(+) m6A 5'UTR//exon//intron       24284625//24981863 chr22:38453543-38453544(+) m6A 5'UTR//exon//intron       24284625//24981863 chr22:38453826-38453827(+) m6A CDS//exon       24284625 chr22:38453854-38453855(+) m6A CDS//exon       24284625 chr22:38453919-38453920(+) m6A exon//intron       24284625 chr22:38453936-38453937(+) m6A exon//intron       24284625 chr22:38455290-38455291(+) m6A CDS//exon//intron       24284625 chr22:38461098-38461099(+) m6A CDS//exon       24284625 chr22:38461189-38461190(+) m6A exon//intron       24284625 chr22:38469916-38469917(+) m6A exon//intron       - chr22:38469925-38469926(+) m6A exon//intron       - chr22:38469935-38469936(+) m6A exon//intron       - chr22:38470876-38470877(+) m6A CDS//exon       24284625 chr22:38470978-38470979(+) m6A CDS//exon       24284625//25456834//22608085 chr22:38471056-38471057(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr22:38471110-38471111(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr22:38471285-38471286(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr22:38471304-38471305(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr22:38471329-38471330(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr22:38471335-38471336(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr22:38471400-38471401(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr22:38471444-38471445(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr22:38471530-38471531(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr22:38471580-38471581(+) m6A 3'UTR//exon       24284625//25456834//24981863//22608085 chr22:38471688-38471689(+) m6A 3'UTR//exon       24284625 chr22:38471694-38471695(+) m6A 3'UTR//exon       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsv2-miR-H25	Exosome K562 cells     24460325
	PICK1	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H25
Interactor2: PICK1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid//Targetscan
Support Database	VmiReg