Basic Information:

  VIRBase ID:  

VHID00196503

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H24:  MIMAT0014707          COPZ1:  NR_073424     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H24	COPZ1
miRBase Accession/Entrez ID	MIMAT0014707	22818
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CGI-120//COPZ//HSPC181//zeta-COP//zeta1-COP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	COPZ1	chr12:54740482(+) A-I      intronic chr12:54740497(+) A-I      intronic chr12:54729322(+) A-I      intronic chr12:54740480(+) A-I      intronic chr12:54739584(+) A-I      intronic chr12:54739607(+) A-I      intronic chr12:54739564(+) A-I      intronic chr12:54725202(+) A-I      intronic chr12:54725094(+) A-I      intronic chr12:54725064(+) A-I      intronic chr12:54723309(+) A-I      intronic chr12:54723220(+) A-I      intronic chr12:54723217(+) A-I      intronic chr12:54723208(+) A-I      intronic chr12:54722309(+) A-I      intronic chr12:54722295(+) A-I      intronic chr12:54722221(+) A-I      intronic chr12:54721949(+) A-I      intronic chr12:54721946(+) A-I      intronic chr12:54721945(+) A-I      intronic chr12:54721939(+) A-I      intronic chr12:54721433(+) A-I      intronic chr12:54721315(+) A-I      intronic chr12:54721150(+) A-I      intronic chr12:54720948(+) A-I      intronic chr12:54720894(+) A-I      intronic chr12:54719785(+) A-I      intronic chr12:54720060(+) A-I      intronic chr12:54720109(+) A-I      intronic chr12:54740481(+) A-I      intronic chr12:54740454(+) A-I      intronic chr12:54740443(+) A-I      intronic chr12:54740439(+) A-I      intronic chr12:54740156(+) A-I      intronic chr12:54720864(+) A-I      intronic chr12:54740151(+) A-I      intronic chr12:54740145(+) A-I      intronic chr12:54740083(+) A-I      intronic chr12:54739731(+) A-I      intronic chr12:54739711(+) A-I      intronic chr12:54739706(+) A-I      intronic chr12:54739530(+) A-I      intronic chr12:54739492(+) A-I      intronic chr12:54738049(+) A-I      intronic chr12:54738048(+) A-I      intronic chr12:54738025(+) A-I      intronic chr12:54733369(+) A-I      intronic chr12:54725106(+) A-I      intronic chr12:54733289(+) A-I      intronic chr12:54730271(+) A-I      intronic chr12:54730266(+) A-I      intronic chr12:54730262(+) A-I      intronic chr12:54730171(+) A-I      intronic chr12:54729661(+) A-I      intronic chr12:54729595(+) A-I      intronic chr12:54729262(+) A-I      intronic chr12:54728908(+) A-I      intronic chr12:54728907(+) A-I      intronic chr12:54728596(+) A-I      intronic chr12:54728591(+) A-I      intronic chr12:54728146(+) A-I      intronic chr12:54728137(+) A-I      intronic chr12:54728090(+) A-I      intronic chr12:54728085(+) A-I      intronic chr12:54727413(+) A-I      intronic chr12:54727019(+) A-I      intronic chr12:54727004(+) A-I      intronic chr12:54726957(+) A-I      intronic chr12:54740485(+) A-I      intronic chr12:54732973(+) A-I      intronic chr12:54719788(+) A-I      intronic chr12:54722229(+) A-I      intronic chr12:54721428(+) A-I      intronic chr12:54720950(+) A-I      intronic chr12:54730204(+) A-I      intronic chr12:54722192(+) A-I      intronic chr12:54729722(+) A-I      intronic chr12:54721937(+) A-I      intronic chr12:54733297(+) A-I      intronic chr12:54740513(+) A-I      intronic chr12:54727348(+) A-I      intronic chr12:54726848(+) A-I      intronic chr12:54726371(+) A-I      intronic chr12:54733206(+) A-I      intronic chr12:54723192(+) A-I      intronic chr12:54723259(+) A-I      intronic chr12:54725131(+) A-I      intronic chr12:54740237(+) A-I      intronic chr12:54737958(+) A-I      intronic chr12:54726533(+) A-I      intronic chr12:54729382(+) A-I      intronic chr12:54734694(+) A-I      intronic chr12:54725239(+) A-I      intronic chr12:54730214(+) A-I      intronic chr12:54739590(+) A-I      intronic chr12:54721266(+) A-I      intronic chr12:54740550(+) A-I      intronic chr12:54725854(+) A-I      intronic chr12:54725021(+) A-I      intronic chr12:54725985(+) A-I      intronic chr12:54722230(+) A-I      intronic chr12:54729376(+) A-I      intronic chr12:54726928(+) A-I      intronic chr12:54733265(+) A-I      intronic chr12:54740484(+) A-I      intronic chr12:54723346(+) A-I      intronic chr12:54727441(+) A-I      intronic chr12:54719682(+) A-I      intronic chr12:54726337(+) A-I      intronic chr12:54726407(+) A-I      intronic chr12:54740444(+) A-I      intronic chr12:54726967(+) A-I      intronic chr12:54725986(+) A-I      intronic chr12:54727108(+) A-I      intronic chr12:54721441(+) A-I      intronic chr12:54730174(+) A-I      intronic chr12:54733366(+) A-I      intronic chr12:54727370(+) A-I      intronic chr12:54730210(+) A-I      intronic chr12:54729332(+) A-I      intronic chr12:54740458(+) A-I      intronic chr12:54729730(+) A-I      intronic chr12:54725058(+) A-I      intronic chr12:54725237(+) A-I      intronic chr12:54727030(+) A-I      intronic chr12:54738772(+) A-I      intronic chr12:54726932(+) A-I      intronic chr12:54730747(+) A-I      intronic chr12:54729533(+) A-I      intronic chr12:54740493(+) A-I      intronic chr12:54740304(+) A-I      intronic chr12:54723266(+) A-I      intronic chr12:54723247(+) A-I      intronic chr12:54738611(+) A-I      intronic chr12:54729514(+) A-I      intronic chr12:54739580(+) A-I      intronic chr12:54740223(+) A-I      intronic chr12:54728883(+) A-I      intronic chr12:54733298(+) A-I      intronic chr12:54738666(+) A-I      intronic chr12:54725065(+) A-I      intronic chr12:54740490(+) A-I      intronic chr12:54728450(+) A-I      intronic chr12:54740152(+) A-I      intronic chr12:54721532(+) A-I      intronic chr12:54725941(+) A-I      intronic chr12:54738216(+) A-I      intronic chr12:54723214(+) A-I      intronic chr12:54740560(+) A-I      intronic chr12:54725145(+) A-I      intronic chr12:54728126(+) A-I      intronic chr12:54726931(+) A-I      intronic chr12:54723216(+) A-I      intronic chr12:54726342(+) A-I      intronic chr12:54720865(+) A-I      intronic chr12:54740202(+) A-I      intronic chr12:54720869(+) A-I      intronic chr12:54721320(+) A-I      intronic chr12:54719707(+) A-I      intronic chr12:54725165(+) A-I      intronic chr12:54722239(+) A-I      intronic chr12:54729487(+) A-I      intronic chr12:54740615(+) A-I      intronic chr12:54729358(+) A-I      intronic chr12:54740222(+) A-I      intronic chr12:54739525(+) A-I      intronic chr12:54721406(+) A-I      intronic chr12:54720945(+) A-I      intronic chr12:54740628(+) A-I      intronic chr12:54727106(+) A-I      intronic chr12:54721044(+) A-I      intronic chr12:54730178(+) A-I      intronic chr12:54739487(+) A-I      intronic chr12:54725104(+) A-I      intronic chr12:54728838(+) A-I      intronic chr12:54740231(+) A-I      intronic chr12:54730228(+) A-I      intronic chr12:54740257(+) A-I      intronic chr12:54738739(+) A-I      intronic chr12:54723257(+) A-I      intronic chr12:54728837(+) A-I      intronic chr12:54727761(+) A-I      intronic chr12:54740565(+) A-I      intronic chr12:54733271(+) A-I      intronic chr12:54727800(+) A-I      intronic chr12:54727039(+) A-I      intronic chr12:54723345(+) A-I      intronic chr12:54739554(+) A-I      intronic chr12:54738393(+) A-I      intronic chr12:54720951(+) A-I      intronic chr12:54729367(+) A-I      intronic chr12:54726501(+) A-I      intronic chr12:54740627(+) A-I      intronic chr12:54740486(+) A-I      intronic chr12:54721211(+) A-I      intronic chr12:54739594(+) A-I      intronic chr12:54719732(+) A-I      intronic chr12:54726252(+) A-I      intronic chr12:54730771(+) A-I      intronic chr12:54721349(+) A-I      intronic chr12:54725175(+) A-I      intronic chr12:54738728(+) A-I      intronic chr12:54720868(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	COPZ1	chr12:54721406(+) A-G intron -    22484847 chr12:54725985(+) A-G intron -    22484847 chr12:54725986(+) A-G intron -    22484847 chr12:54727030(+) A-G intron -    22484847 chr12:54727106(+) A-G intron -    22484847 chr12:54727370(+) A-G intron -    22484847 chr12:54729332(+) A-G intron -    22484847 chr12:54729533(+) A-G intron -    22484847 chr12:54730174(+) A-G intron -    22484847 chr12:54733271(+) A-G intron -    22484847 chr12:54738728(+) A-G intron -    22484847 chr12:54740615(+) A-G intron -    22484847 chr12:54720865(+) A-G intron -    22484847 chr12:54720868(+) A-G intron -    22484847 chr12:54720950(+) A-G intron -    22484847 chr12:54720951(+) A-G intron -    22484847 chr12:54721349(+) A-G intron -    22484847 chr12:54721937(+) A-G intron -    22484847 chr12:54722229(+) A-G intron -    22484847 chr12:54722230(+) A-G intron -    22484847 chr12:54723214(+) A-G intron -    22484847 chr12:54723266(+) A-G intron -    22484847 chr12:54724982(+) G-T intron -    22484847 chr12:54725021(+) A-G intron -    22484847 chr12:54725058(+) A-G intron -    22484847 chr12:54725065(+) A-G intron -    22484847 chr12:54725104(+) A-G intron -    22484847 chr12:54725131(+) A-G intron -    22484847 chr12:54725145(+) A-G intron -    22484847 chr12:54725165(+) A-G intron -    22484847 chr12:54725175(+) A-G intron -    22484847 chr12:54725239(+) A-G intron -    22484847 chr12:54725854(+) A-G intron -    22484847 chr12:54726501(+) A-G intron -    22484847 chr12:54726848(+) A-G intron -    22484847 chr12:54726928(+) A-G intron -    22484847 chr12:54726931(+) A-G intron -    22484847 chr12:54727039(+) A-G intron -    22484847 chr12:54729376(+) A-G intron -    22484847 chr12:54729722(+) A-G intron -    22484847 chr12:54729730(+) A-G intron -    22484847 chr12:54730204(+) A-G intron -    22484847 chr12:54733366(+) A-G intron -    22484847 chr12:54738739(+) A-G intron -    22484847 chr12:54739554(+) A-G intron -    22484847 chr12:54739594(+) A-G intron -    22484847 chr12:54740257(+) A-G intron -    22484847 chr12:54740484(+) A-G intron -    22484847 chr12:54740485(+) A-G intron -    22484847 chr12:54740493(+) A-G intron -    22484847 chr12:54740513(+) A-G intron -    22484847 chr12:54740565(+) A-G intron -    22484847 chr12:54740627(+) A-G intron -    22484847 chr12:54740628(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	COPZ1	chr12:54719425-54719426(+) m6A 5'UTR//intron       24284625 chr12:54734256-54734257(+) m6A 5'UTR//intron       24981863 chr12:54734303-54734304(+) m6A CDS//intron       24284625//24981863 chr12:54734332-54734333(+) m6A 5'UTR//CDS//exon//intron       24284625 chr12:54734370-54734371(+) m6A 5'UTR//CDS//exon//intron       24284625 chr12:54736041-54736042(+) m6A 5'UTR//CDS//exon//intron       24284625 chr12:54736055-54736056(+) m6A 5'UTR//CDS//exon//intron       24284625 chr12:54736064-54736065(+) m6A 5'UTR//CDS//exon//intron       24284625 chr12:54740440-54740441(+) m6A CDS//intron       27773535 chr12:54741582-54741583(+) m6A CDS//exon       24981863//27773535 chr12:54741618-54741619(+) Tm 3'UTR//CDS//exon       - chr12:54744894-54744895(+) m6A 3'UTR       26404942 chr12:54744908-54744909(+) m6A 3'UTR       26404942 chr12:54744930-54744931(+) m6A 3'UTR       26404942 chr12:54744981-54744982(+) m6A 3'UTR       26404942 chr12:54745421-54745422(+) m6A 3'UTR       24284625//26404942 chr12:54745450-54745451(+) m6A 3'UTR       24284625//26404942//27773535 chr12:54745461-54745462(+) m6A 3'UTR       24284625//26404942//27773535 chr12:54745578-54745579(+) m6A 3'UTR       27773535 chr12:54745591-54745592(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	COPZ1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H24
Interactor2: COPZ1

Evidence Support:

Prediction-Evidence	cRep//RNAHybrid
Support Database	RepTar//VmiReg