Basic Information:

  VIRBase ID:  

VHID00195794

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-3p:  MIMAT0014706          ZNF678:  NR_102302     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-3p	ZNF678
miRBase Accession/Entrez ID	MIMAT0014706	339500
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ZNF678	chr1:227804419(+) A-I      intronic chr1:227846335(+) A-I      3'UTR chr1:227804420(+) A-I      intronic chr1:227804445(+) A-I      intronic chr1:227804469(+) A-I      intronic chr1:227804487(+) A-I      intronic chr1:227756943(+) A-I      intronic chr1:227837191(+) A-I      intronic chr1:227759725(+) A-I      intronic chr1:227773367(+) A-I      intronic chr1:227759489(+) A-I      intronic chr1:227756824(+) A-I      intronic chr1:227756959(+) A-I      intronic chr1:227773809(+) A-I      intronic chr1:227756960(+) A-I      intronic chr1:227837121(+) A-I      intronic chr1:227768510(+) A-I      intronic chr1:227799945(+) A-I      intronic chr1:227837096(+) A-I      intronic chr1:227836337(+) A-I      intronic chr1:227836309(+) A-I      intronic chr1:227836320(+) A-I      intronic chr1:227773381(+) A-I      intronic chr1:227805213(+) A-I      intronic chr1:227834811(+) A-I      intronic chr1:227770156(+) A-I      intronic chr1:227759488(+) A-I      intronic chr1:227837110(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ZNF678	chr1:227805213(+) A-G intron -    22484847 chr1:227759488(+) A-G intron -    22484847 chr1:227768510(+) A-G intron -    22484847 chr1:227771052(+) T-C intron -    22484847 chr1:227771053(+) C-T intron -    22484847 chr1:227773381(+) A-G intron -    22484847 chr1:227836305(+) G-A intron -    22484847 chr1:227837110(+) A-G intron -    22484847 chr1:227837121(+) A-G intron -    22484847 chr1:227837211(+) T-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ZNF678	chr1:227838741-227838742(+) m6A CDS//exon//intron       24284625//22608085 chr1:227838763-227838764(+) m6A CDS//exon//intron       24284625//24981863//22608085 chr1:227842060-227842061(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr1:227842115-227842116(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:227842156-227842157(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:227842164-227842165(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:227842205-227842206(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr1:227842292-227842293(+) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:227842366-227842367(+) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:227842376-227842377(+) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:227842403-227842404(+) m6A CDS//intron       24284625//24981863//27773535//22608085 chr1:227842487-227842488(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227842571-227842572(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227842618-227842619(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227842655-227842656(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227842702-227842703(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227842739-227842740(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:227842796-227842797(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227842823-227842824(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227842907-227842908(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:227842935-227842936(+) m6A CDS//intron       24284625//24209618//24981863//22608085 chr1:227842991-227842992(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227843019-227843020(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227843038-227843039(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227843075-227843076(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227843159-227843160(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227843195-227843196(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227843243-227843244(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227843327-227843328(+) m6A CDS//intron       24284625//24981863//22608085 chr1:227843495-227843496(+) m6A CDS//intron       24981863//22608085 chr1:227843531-227843532(+) m6A 3'UTR//intron       24981863//22608085 chr1:227843706-227843707(+) m6A 3'UTR//intron       24981863//22608085 chr1:227843729-227843730(+) m6A 3'UTR//intron       24981863//22608085 chr1:227843737-227843738(+) m6A 3'UTR//intron       24981863//22608085 chr1:227843749-227843750(+) m6A 3'UTR//intron       24981863//22608085 chr1:227843787-227843788(+) m6A 3'UTR//intron       24981863//22608085 chr1:227843808-227843809(+) m6A 3'UTR//intron       24981863//22608085 chr1:227843837-227843838(+) m6A 3'UTR//intron       24981863//22608085 chr1:227843890-227843891(+) m6A 3'UTR//intron       22608085 chr1:227843919-227843920(+) m6A 3'UTR//intron       22608085 chr1:227849059-227849060(+) m6A 3'UTR//intron       22608085 chr1:227849065-227849066(+) m6A 3'UTR//intron       22608085 chr1:227849111-227849112(+) m6A 3'UTR//intron       24284625//22608085 chr1:227849146-227849147(+) m6A 3'UTR//intron       24284625//22608085 chr1:227849211-227849212(+) m6A 3'UTR//intron       24284625//22608085 chr1:227849280-227849281(+) m6A 3'UTR//intron       22608085 chr1:227849298-227849299(+) m6A 3'UTR//intron       22608085 chr1:227849367-227849368(+) m6A 3'UTR//intron       25456834//22608085 chr1:227849376-227849377(+) m6A 3'UTR//intron       25456834//22608085 chr1:227849429-227849430(+) m6A 3'UTR//intron       24284625//25456834//22608085 chr1:227849448-227849449(+) m6A 3'UTR//intron       24284625//25456834//22608085 chr1:227849463-227849464(+) m6A 3'UTR//intron       24284625//25456834//22608085 chr1:227849622-227849623(+) m6A 3'UTR//intron       - chr1:227849646-227849647(+) m6A 3'UTR//intron       - chr1:227864961-227864962(+) m6A 3'UTR       24284625//22608085 chr1:227864974-227864975(+) m6A 3'UTR       24284625//25456834//22608085 chr1:227865043-227865044(+) m6A 3'UTR       24284625//25456834//22608085 chr1:227865051-227865052(+) m6A 3'UTR       24284625//25456834//22608085 chr1:227865061-227865062(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:227865084-227865085(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:227865097-227865098(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:227865119-227865120(+) m6A 3'UTR       24284625//25456834//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ZNF678	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-3p
Interactor2: ZNF678

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg