Basic Information:

  VIRBase ID:  

VHID00195789

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-3p:  MIMAT0014706          CEP170B:  NM_015005     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-3p	CEP170B
miRBase Accession/Entrez ID	MIMAT0014706	283638
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CEP170R//FAM68C//KIAA0284

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CEP170B	chr14:105336835(+) A-I      intronic chr14:105341666(+) A-I      intronic chr14:105337942(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CEP170B	chr14:105331757-105331758(+) m6A 5'UTR       24284625//25456834 chr14:105331780-105331781(+) m6A 5'UTR       24284625//25456834 chr14:105331791-105331792(+) m6A 5'UTR       24284625//25456834 chr14:105331803-105331804(+) m6A 5'UTR       24284625//25456834 chr14:105331815-105331816(+) m6A 5'UTR       24284625//25456834 chr14:105331832-105331833(+) m6A 5'UTR       24284625//24209618//25456834//24981863 chr14:105331843-105331844(+) m6A 5'UTR       24284625//24209618//25456834//24981863 chr14:105342605-105342606(+) m6A 5'UTR//CDS       24981863 chr14:105342638-105342639(+) m6A 5'UTR//CDS       24981863 chr14:105342662-105342663(+) m6A 5'UTR//CDS       24981863 chr14:105344249-105344250(+) m6A CDS       24981863 chr14:105346697-105346698(+) m6A CDS       - chr14:105346723-105346724(+) m6A CDS       - chr14:105346744-105346745(+) m6A CDS       - chr14:105346751-105346752(+) m6A CDS       - chr14:105346758-105346759(+) m6A CDS       - chr14:105349384-105349385(+) m6A CDS       24284625//24209618 chr14:105349490-105349491(+) m6A CDS       24284625 chr14:105349637-105349638(+) Am CDS       - chr14:105349647-105349648(+) m6A CDS       24284625 chr14:105349727-105349728(+) m6A CDS       24284625//24209618 chr14:105350206-105350207(+) m6A CDS       24284625//25456834//24981863 chr14:105350293-105350294(+) m6A CDS       24284625 chr14:105350350-105350351(+) m6A CDS       24284625 chr14:105350401-105350402(+) m6A CDS       24284625//24209618//25456834 chr14:105350446-105350447(+) m6A CDS       24284625//25456834//24981863 chr14:105350529-105350530(+) m6A CDS       24284625//25456834//24981863 chr14:105350568-105350569(+) m6A CDS       24284625//25456834//24981863 chr14:105350620-105350621(+) m6A CDS       24284625//25456834//24981863 chr14:105350718-105350719(+) m6A CDS       24284625//24209618//25456834//24981863 chr14:105350761-105350762(+) m6A CDS       24284625//24209618//25456834 chr14:105350786-105350787(+) m6A CDS       24284625//24209618//25456834 chr14:105350820-105350821(+) m6A CDS       24284625//25456834 chr14:105350835-105350836(+) m6A CDS       24284625 chr14:105350848-105350849(+) m6A CDS       24284625 chr14:105351731-105351732(+) m6A CDS       24284625 chr14:105351778-105351779(+) m6A CDS       24284625 chr14:105352452-105352453(+) m6A CDS       24284625 chr14:105352761-105352762(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105352875-105352876(+) m6A CDS       24284625//24209618//25456834//24981863//27773536//22575960//22608085 chr14:105352977-105352978(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr14:105353008-105353009(+) m6A CDS       24284625//25456834//24981863//26404942//22575960//22608085 chr14:105353048-105353049(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr14:105353140-105353141(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105353256-105353257(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105353286-105353287(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105353301-105353302(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105353433-105353434(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105353445-105353446(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105353556-105353557(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105353631-105353632(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105353774-105353775(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105353818-105353819(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105353982-105353983(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105354078-105354079(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105354122-105354123(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:105355930-105355931(+) m6A CDS//intron       24284625 chr14:105355964-105355965(+) m6A CDS       24284625 chr14:105356019-105356020(+) m6A CDS       24284625 chr14:105359920-105359921(+) m6A CDS       24284625 chr14:105359929-105359930(+) m6A CDS       24284625 chr14:105359941-105359942(+) m6A CDS       24284625 chr14:105359992-105359993(+) m6A CDS       - chr14:105360617-105360618(+) m6A exon//intron       - chr14:105360635-105360636(+) m6A CDS//exon       - chr14:105360656-105360657(+) m6A CDS//exon       - chr14:105360703-105360704(+) m6A CDS//exon       - chr14:105361083-105361084(+) m6A CDS//exon       24284625 chr14:105361098-105361099(+) m6A CDS//exon       24284625 chr14:105361254-105361255(+) m6A CDS//exon       24284625 chr14:105361302-105361303(+) m6A 3'UTR//exon       24284625 chr14:105361394-105361395(+) m6A 3'UTR//exon       24284625 chr14:105361910-105361911(+) m6A 3'UTR       25456834 chr14:105361955-105361956(+) m6A 3'UTR       25456834 chr14:105361997-105361998(+) m6A 3'UTR       25456834 chr14:105362056-105362057(+) m6A 3'UTR       25456834 chr14:105362095-105362096(+) Y 3'UTR       26075521 chr14:105362451-105362452(+) m6A 3'UTR       24284625//25456834//24981863 chr14:105362456-105362457(+) m6A 3'UTR       24284625//25456834//24981863 chr14:105362506-105362507(+) m6A 3'UTR       24284625//25456834 chr14:105362512-105362513(+) m6A 3'UTR       24284625//25456834 chr14:105362545-105362546(+) m6A 3'UTR       24284625//25456834 chr14:105362804-105362805(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CEP170B	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-3p
Interactor2: CEP170B

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg