Basic Information:

  VIRBase ID:  

VHID00195783

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-3p:  MIMAT0014706          C6orf89:  NM_001286635     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-3p	C6orf89
miRBase Accession/Entrez ID	MIMAT0014706	221477
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	BRAP//PS1TP5TP1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	C6orf89	chr6:36877386(+) A-I      intronic chr6:36870906(+) A-I      intronic chr6:36864893(+) A-I      intronic chr6:36864756(+) A-I      intronic chr6:36864689(+) A-I      intronic chr6:36864013(+) A-I      intronic chr6:36864011(+) A-I      intronic chr6:36863984(+) A-I      intronic chr6:36861760(+) A-I      intronic chr6:36861757(+) A-I      intronic chr6:36861745(+) A-I      intronic chr6:36861650(+) A-I      intronic chr6:36856304(+) A-I      intronic chr6:36855705(+) A-I      intronic chr6:36861647(+) A-I      intronic chr6:36861779(+) A-I      intronic chr6:36861788(+) A-I      intronic chr6:36861790(+) A-I      intronic chr6:36855736(+) A-I      intronic chr6:36855739(+) A-I      intronic chr6:36855753(+) A-I      intronic chr6:36855761(+) A-I      intronic chr6:36864090(+) A-I      intronic chr6:36861750(+) A-I      intronic chr6:36864826(+) A-I      intronic chr6:36861680(+) A-I      intronic chr6:36864023(+) A-I      intronic chr6:36864785(+) A-I      intronic chr6:36864786(+) A-I      intronic chr6:36861693(+) A-I      intronic chr6:36878383(+) A-I      intronic chr6:36868932(+) A-I      intronic chr6:36894153(+) A-I      3'UTR chr6:36877950(+) A-I      intronic chr6:36861516(+) A-I      intronic chr6:36870907(+) A-I      intronic chr6:36856263(+) A-I      intronic chr6:36864855(+) A-I      intronic chr6:36856175(+) A-I      intronic chr6:36864850(+) A-I      intronic chr6:36855521(+) A-I      intronic chr6:36856330(+) A-I      intronic chr6:36860850(+) A-I      intronic chr6:36861696(+) A-I      intronic chr6:36861644(+) A-I      intronic chr6:36861453(+) A-I      intronic chr6:36855735(+) A-I      intronic chr6:36889661(+) A-I      intronic chr6:36855623(+) A-I      intronic chr6:36870924(+) A-I      intronic chr6:36864144(+) A-I      intronic chr6:36856153(+) A-I      intronic chr6:36866317(+) A-I      intronic chr6:36878557(+) A-I      intronic chr6:36860810(+) A-I      intronic chr6:36861492(+) A-I      intronic chr6:36855639(+) A-I      intronic chr6:36877988(+) A-I      intronic chr6:36861643(+) A-I      intronic chr6:36856391(+) A-I      intronic chr6:36855574(+) A-I      intronic chr6:36861487(+) A-I      intronic chr6:36861635(+) A-I      intronic chr6:36877971(+) A-I      intronic chr6:36864642(+) A-I      intronic chr6:36861679(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	C6orf89	chr6:36855521(+) A-G intron -    22484847 chr6:36855574(+) A-G intron -    22484847 chr6:36855635(+) A-G intron -    22484847 chr6:36855639(+) A-G intron -    22484847 chr6:36856263(+) A-G intron -    22484847 chr6:36856331(+) A-G intron -    22484847 chr6:36858476(+) A-G intron -    22484847 chr6:36861712(+) A-G intron -    22484847 chr6:36864090(+) A-G intron -    22484847 chr6:36864785(+) A-G intron -    22484847 chr6:36869298(+) G-T intron -    22484847 chr6:36870907(+) A-G intron -    22484847 chr6:36879152(+) G-A intron -    22484847 chr6:36890040(+) T-C intron -    22484847 chr6:36890893(+) G-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	C6orf89	chr6:36853725-36853726(+) m6A 5'UTR//intron       24981863 chr6:36860578-36860579(+) m6A 5'UTR//intron       24981863 chr6:36860618-36860619(+) m6A 5'UTR//intron       24981863 chr6:36862334-36862335(+) m6A 5'UTR//intron       24209618//24981863 chr6:36862349-36862350(+) m6A 5'UTR//intron       24284625//24209618//24981863 chr6:36867218-36867219(+) m6A 5'UTR//CDS       24284625//24209618//24981863 chr6:36867258-36867259(+) m6A 5'UTR//CDS       24284625//24209618//24981863//22608085 chr6:36867268-36867269(+) m6A 5'UTR//CDS       24284625//24209618//24981863//22608085 chr6:36867285-36867286(+) m6A 5'UTR//CDS       24284625//24981863//22608085 chr6:36867339-36867340(+) m6A 5'UTR//CDS       24284625//24981863//22608085 chr6:36867360-36867361(+) m6A 5'UTR//CDS       24284625//24981863//22608085 chr6:36867369-36867370(+) m6A 5'UTR//CDS       24284625//24981863//22608085 chr6:36884261-36884262(+) Y CDS       26075521 chr6:36887433-36887434(+) m6A CDS       24284625//24209618//22575960 chr6:36891196-36891197(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:36891210-36891211(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:36891225-36891226(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:36891238-36891239(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:36891257-36891258(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36891283-36891284(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36891297-36891298(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36891351-36891352(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36891447-36891448(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36891469-36891470(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36891492-36891493(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36891527-36891528(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36891733-36891734(+) m6A 3'UTR       24284625 chr6:36892515-36892516(+) m6A 3'UTR       24209618 chr6:36892598-36892599(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36892692-36892693(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36892704-36892705(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36892750-36892751(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36892781-36892782(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36892813-36892814(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36892823-36892824(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:36892878-36892879(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr6:36892886-36892887(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr6:36894229-36894230(+) m6A 3'UTR       24981863 chr6:36894298-36894299(+) m6A 3'UTR       24981863//27773535 chr6:36896272-36896273(+) m6A 3'UTR       24284625 chr6:36896308-36896309(+) m6A 3'UTR       24284625 chr6:36896447-36896448(+) m6A 3'UTR       24284625 chr6:36896453-36896454(+) m6A 3'UTR       24284625 chr6:36896484-36896485(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	C6orf89	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-3p
Interactor2: C6orf89

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg