Detail Information

Basic Information:


  VIRBase ID:  

VHID00195774

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-3p:           ZNF780B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H23-3p ZNF780B
miRBase
Accession/Entrez ID		 MIMAT0014706 163131
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - ZNF779

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF780B
chr19:40537234(-) A-I      3'UTR
chr19:40537298(-) A-I      3'UTR
chr19:40537146(-) A-I      3'UTR
chr19:40537120(-) A-I      3'UTR
chr19:40552893(-) A-I      intronic
chr19:40537158(-) A-I      3'UTR
chr19:40539998(-) A-I      3'UTR
chr19:40539993(-) A-I      3'UTR
chr19:40539944(-) A-I      3'UTR
chr19:40535950(-) A-I      3'UTR
chr19:40537166(-) A-I      3'UTR
chr19:40535951(-) A-I      3'UTR
chr19:40535937(-) A-I      3'UTR
chr19:40537205(-) A-I      3'UTR
chr19:40537275(-) A-I      3'UTR
chr19:40542991(-) A-I      intronic
chr19:40542997(-) A-I      intronic
chr19:40543001(-) A-I      intronic
chr19:40537323(-) A-I      3'UTR
chr19:40537301(-) A-I      3'UTR
chr19:40540006(-) A-I      3'UTR
chr19:40551535(-) A-I      intronic
chr19:40552911(-) A-I      intronic
chr19:40552910(-) A-I      intronic
chr19:40542950(-) A-I      intronic
chr19:40542908(-) A-I      intronic
chr19:40537353(-) A-I      3'UTR
chr19:40537341(-) A-I      3'UTR
chr19:40537231(-) A-I      3'UTR
chr19:40537325(-) A-I      3'UTR
chr19:40537225(-) A-I      3'UTR
chr19:40537218(-) A-I      3'UTR
chr19:40538501(-) A-I      3'UTR
chr19:40537342(-) A-I      3'UTR
chr19:40537393(-) A-I      3'UTR
chr19:40538477(-) A-I      3'UTR
chr19:40537201(-) A-I      3'UTR
chr19:40537324(-) A-I      3'UTR
chr19:40537347(-) A-I      3'UTR
chr19:40538452(-) A-I      3'UTR
chr19:40537293(-) A-I      3'UTR
chr19:40538432(-) A-I      3'UTR
chr19:40538444(-) A-I      3'UTR
chr19:40537197(-) A-I      3'UTR
chr19:40537287(-) A-I      3'UTR
chr19:40537176(-) A-I      3'UTR
chr19:40538467(-) A-I      3'UTR
chr19:40538538(-) A-I      3'UTR
chr19:40537250(-) A-I      3'UTR
chr19:40538506(-) A-I      3'UTR
chr19:40538623(-) A-I      3'UTR
chr19:40537181(-) A-I      3'UTR
chr19:40537379(-) A-I      3'UTR
chr19:40538525(-) A-I      3'UTR
chr19:40537267(-) A-I      3'UTR
chr19:40542986(-) A-I      intronic
chr19:40538412(-) A-I      3'UTR
chr19:40538436(-) A-I      3'UTR
chr19:40537194(-) A-I      3'UTR
chr19:40537361(-) A-I      3'UTR
chr19:40538599(-) A-I      3'UTR
chr19:40537257(-) A-I      3'UTR
chr19:40538404(-) A-I      3'UTR
chr19:40537305(-) A-I      3'UTR
chr19:40537162(-) A-I      3'UTR
chr19:40537402(-) A-I      3'UTR
chr19:40537296(-) A-I      3'UTR
chr19:40537186(-) A-I      3'UTR
chr19:40538568(-) A-I      3'UTR
chr19:40551665(-) A-I      intronic
chr19:40537164(-) A-I      3'UTR
chr19:40537332(-) A-I      3'UTR
chr19:40537356(-) A-I      3'UTR
chr19:40543266(-) A-I      intronic
chr19:40537371(-) A-I      3'UTR
chr19:40537240(-) A-I      3'UTR
chr19:40537306(-) A-I      3'UTR
chr19:40538400(-) A-I      3'UTR
chr19:40538461(-) A-I      3'UTR
chr19:40552980(-) A-I      intronic
chr19:40538592(-) A-I      3'UTR
chr19:40537333(-) A-I      3'UTR
chr19:40538562(-) A-I      3'UTR
chr19:40543429(-) A-I      intronic
chr19:40537322(-) A-I      3'UTR
chr19:40537308(-) A-I      3'UTR
chr19:40537300(-) A-I      3'UTR
chr19:40538578(-) A-I      3'UTR
chr19:40537304(-) A-I      3'UTR
chr19:40538367(-) A-I      3'UTR
chr19:40538587(-) A-I      3'UTR
chr19:40542995(-) A-I      intronic
chr19:40537302(-) A-I      3'UTR
chr19:40537266(-) A-I      3'UTR
chr19:40537261(-) A-I      3'UTR
chr19:40537297(-) A-I      3'UTR
chr19:40537196(-) A-I      3'UTR
chr19:40538513(-) A-I      3'UTR
chr19:40552981(-) A-I      intronic
chr19:40537307(-) A-I      3'UTR
chr19:40543225(-) A-I      intronic
chr19:40551691(-) A-I      intronic
chr19:40552928(-) A-I      intronic
chr19:40542959(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF780B
chr19:40537240(-) A-I exon 3'UTR    15258596   //21960545
chr19:40537266(-) A-I exon 3'UTR    15258596   //15545495   //21960545
chr19:40537300(-) A-I exon 3'UTR    15545495
chr19:40537302(-) A-I exon 3'UTR    15258596
chr19:40537317(-) A-I exon 3'UTR    15545495
chr19:40537371(-) A-I exon 3'UTR    15545495
chr19:40537163(-) A-I exon 3'UTR    21960545   //22327324
chr19:40537196(-) A-I exon 3'UTR    22327324
chr19:40537402(-) A-I exon 3'UTR    22327324
chr19:40537162(-) A-I exon 3'UTR    21960545
chr19:40537257(-) A-I exon 3'UTR    21960545
chr19:40537304(-) A-I exon 3'UTR    21960545
chr19:40537305(-) A-I exon 3'UTR    21960545
chr19:40537306(-) A-I exon 3'UTR    21960545
chr19:40537308(-) A-I exon 3'UTR    21960545
chr19:40535959(-) A-I exon 3'UTR    21960545
chr19:40535959(-) A-G exon 3'UTR    21725310
chr19:40551370(-) A-G intron -    22484847
chr19:40538381(-) A-G exon 3'UTR    22484847
chr19:40538436(-) A-G exon 3'UTR    22484847
chr19:40538503(-) A-G exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF780B
chr19:40536842-40536843(-) m6A 3'UTR       27773535
chr19:40536956-40536957(-) m6A 3'UTR       27773535
chr19:40537126-40537127(-) m6A 3'UTR       27773535
chr19:40538670-40538671(-) m6A 3'UTR       27773535
chr19:40538768-40538769(-) m6A 3'UTR       27773535
chr19:40538776-40538777(-) m6A 3'UTR       27773535
chr19:40538845-40538846(-) m6A 3'UTR       27773535
chr19:40539424-40539425(-) m6A 3'UTR       24981863//27773535//27371828//22575960//22608085
chr19:40539478-40539479(-) m6A 3'UTR       24981863//27773535//27371828//22608085
chr19:40539499-40539500(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40539568-40539569(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40539648-40539649(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40539676-40539677(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40539724-40539725(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40539732-40539733(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40539816-40539817(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr19:40539844-40539845(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40539899-40539900(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40539926-40539927(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40540010-40540011(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40540037-40540038(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40540046-40540047(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40540093-40540094(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40540130-40540131(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40540178-40540179(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40540204-40540205(-) m6A 3'UTR       24981863//27773535//22608085
chr19:40540260-40540261(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr19:40540288-40540289(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr19:40540309-40540310(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr19:40540320-40540321(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr19:40540345-40540346(-) m6A CDS       24284625//24981863//27773535//22608085
chr19:40540362-40540363(-) m6A CDS       24284625//24981863//27773535//22608085
chr19:40540392-40540393(-) m6A CDS       24981863//27773535//22608085
chr19:40540428-40540429(-) m6A CDS       24981863//27773535//22608085
chr19:40540465-40540466(-) m6A CDS       24981863//27773535//22608085
chr19:40540596-40540597(-) m6A CDS       24284625//24981863//27773535//22608085
chr19:40540623-40540624(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr19:40540652-40540653(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr19:40540680-40540681(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr19:40540697-40540698(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr19:40540717-40540718(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr19:40540764-40540765(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr19:40540801-40540802(-) m6A CDS       24209618//24981863//27773535//22608085
chr19:40540867-40540868(-) m6A CDS       24209618//24981863//27773535//22608085
chr19:40541016-40541017(-) m6A CDS       27773535//22608085
chr19:40541100-40541101(-) m6A CDS       24981863//27773535//22608085
chr19:40541117-40541118(-) m6A CDS       24981863//27773535//22608085
chr19:40541148-40541149(-) m6A CDS       24981863//27773535//22608085
chr19:40541221-40541222(-) m6A CDS       24284625//25456834//24981863//27773535//22575960//22608085
chr19:40541251-40541252(-) m6A CDS       24284625//25456834//24981863//27773535//22575960//22608085
chr19:40541268-40541269(-) m6A CDS       24284625//25456834//24981863//27773535//22575960//22608085
chr19:40541287-40541288(-) m6A CDS       24284625//25456834//24981863//27773535//22575960//22608085
chr19:40541352-40541353(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr19:40541436-40541437(-) m6A CDS       24209618//24981863//27773535//22608085
chr19:40541520-40541521(-) m6A CDS       24209618//24981863//27773535//22608085
chr19:40541557-40541558(-) m6A CDS       24981863//27773535//22608085
chr19:40541604-40541605(-) m6A CDS       24981863//27773535//22608085
chr19:40541772-40541773(-) m6A CDS       24981863//27773535//22608085
chr19:40541799-40541800(-) m6A CDS       24981863//27773535//22608085
chr19:40541856-40541857(-) m6A CDS       24981863//27773535//22608085
chr19:40541940-40541941(-) m6A CDS       24981863//27773535//22608085
chr19:40541977-40541978(-) m6A CDS       24981863//27773535//22608085
chr19:40542024-40542025(-) m6A CDS       24284625//24981863//27773535//22608085
chr19:40542043-40542044(-) m6A CDS       24284625//24981863//27773535//22608085
chr19:40542107-40542108(-) m6A CDS       24981863//27773535//22608085
chr19:40542192-40542193(-) m6A CDS       24981863//27773535//22608085
chr19:40542276-40542277(-) m6A CDS       24981863//27773535//22608085
chr19:40542366-40542367(-) m6A 5'UTR//CDS       24981863//27773535//22608085
chr19:40542437-40542438(-) m6A 3'UTR//5'UTR//CDS       24981863//27773535//22608085
chr19:40542462-40542463(-) m6A 3'UTR//5'UTR//CDS       24981863//27773535//22608085
chr19:40542513-40542514(-) m6A 5'UTR//CDS       27773535//22608085
chr19:40553235-40553236(-) m6A exon//intron       27773535
chr19:40562029-40562030(-) m6A 5'UTR//intron       -
chr19:40562035-40562036(-) m6A 5'UTR//intron       -
chr19:40562041-40562042(-) m6A 5'UTR//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZNF780B
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H23-3p
Interactor2: ZNF780B

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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