Detail Information

Basic Information:


  VIRBase ID:  

VHID00195771

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-3p:           TSTD2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H23-3p TSTD2
miRBase
Accession/Entrez ID		 MIMAT0014706 158427
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - C9orf97

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TSTD2
chr9:100394124(-) A-I      intronic
chr9:100394017(-) A-I      intronic
chr9:100362958(-) A-I      3'UTR
chr9:100362964(-) A-I      3'UTR
chr9:100362968(-) A-I      3'UTR
chr9:100362970(-) A-I      3'UTR
chr9:100362971(-) A-I      3'UTR
chr9:100363014(-) A-I      3'UTR
chr9:100363024(-) A-I      3'UTR
chr9:100394050(-) A-I      intronic
chr9:100393608(-) A-I      intronic
chr9:100394018(-) A-I      intronic
chr9:100393934(-) A-I      intronic
chr9:100393432(-) A-I      intronic
chr9:100394004(-) A-I      intronic
chr9:100393960(-) A-I      intronic
chr9:100394044(-) A-I      intronic
chr9:100393637(-) A-I      intronic
chr9:100381860(-) A-I      intronic
chr9:100394040(-) A-I      intronic
chr9:100393495(-) A-I      intronic
chr9:100393676(-) A-I      intronic
chr9:100385944(-) A-I      intronic
chr9:100381880(-) A-I      intronic
chr9:100393884(-) A-I      intronic
chr9:100394949(-) A-I      intronic
chr9:100393527(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TSTD2
chr9:100393676(-) A-G intron -    22484847
chr9:100394040(-) A-G intron -    22484847
chr9:100394044(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TSTD2
chr9:100362628-100362629(-) m6A 3'UTR//exon       24284625
chr9:100362673-100362674(-) m6A 3'UTR//exon       24284625
chr9:100362683-100362684(-) m6A 3'UTR//exon       24284625
chr9:100363392-100363393(-) m6A 3'UTR//exon       24284625//24981863
chr9:100364563-100364564(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:100364650-100364651(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:100364665-100364666(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:100364674-100364675(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:100364828-100364829(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:100364883-100364884(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:100364919-100364920(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr9:100364954-100364955(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr9:100365011-100365012(-) m6A 3'UTR//CDS//exon       24284625//24981863//27371828//22608085
chr9:100365021-100365022(-) m6A 3'UTR//CDS//exon       24284625
chr9:100388122-100388123(-) m6A 3'UTR//CDS       24981863//22608085
chr9:100388162-100388163(-) m6A 3'UTR//CDS       24981863//22608085
chr9:100388176-100388177(-) m6A 3'UTR//CDS       24981863//22608085
chr9:100388181-100388182(-) m6A 3'UTR//CDS       24981863//22608085
chr9:100388257-100388258(-) m6A 3'UTR//CDS       24981863//22608085
chr9:100389800-100389801(-) m6A CDS       27773535//22608085
chr9:100389821-100389822(-) m6A CDS       27773535//22608085
chr9:100389848-100389849(-) m6A 5'UTR       24981863//27773535//22608085
chr9:100395531-100395532(-) m6A 5'UTR       24209618//24981863//27773535//27371828//22608085
chr9:100395549-100395550(-) m6A 5'UTR       24284625//24209618//24981863//27773535//27371828//22608085
chr9:100395567-100395568(-) m6A 5'UTR       24284625//24209618//24981863//27773535//27371828//22608085
chr9:100395668-100395669(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TSTD2
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H23-3p
Interactor2: TSTD2

Evidence Support:


Prediction-Evidence miRanda//Targetscan
Support Database VmiReg

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