Basic Information:

  VIRBase ID:  

VHID00195757

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-3p:  MIMAT0014706          GGT6:  NM_001288702     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-3p	GGT6
miRBase Accession/Entrez ID	MIMAT0014706	124975
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	GGT6	chr17:4460607(-) A-I      3'UTR chr17:4460608(-) A-I      3'UTR chr17:4460783(-) A-I      3'UTR chr17:4460644(-) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	GGT6	chr17:4461126-4461127(-) m6A 3'UTR       - chr17:4461136-4461137(-) m6A 3'UTR       - chr17:4461244-4461245(-) m6A 3'UTR       - chr17:4461392-4461393(-) m6A CDS       - chr17:4461426-4461427(-) m6A CDS       - chr17:4461524-4461525(-) m6A CDS       - chr17:4461721-4461722(-) m6A CDS       - chr17:4461761-4461762(-) m6A CDS       - chr17:4461834-4461835(-) m6A CDS//intron       - chr17:4461903-4461904(-) m6A CDS//intron       - chr17:4461949-4461950(-) m6A CDS//intron       - chr17:4461988-4461989(-) m6A CDS//intron       - chr17:4462070-4462071(-) m6A CDS//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	GGT6	Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-3p
Interactor2: GGT6

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg