Basic Information:

  VIRBase ID:  

VHID00195745

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-3p:  MIMAT0014706          RAB11FIP4:  NM_001346749     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-3p	RAB11FIP4
miRBase Accession/Entrez ID	MIMAT0014706	84440
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FIP4-Rab11//RAB11-FIP4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RAB11FIP4	chr17:29862145(+) A-I      3'UTR chr17:29862147(+) A-I      3'UTR chr17:29830168(+) A-I      intronic chr17:29846096(+) A-I      intronic chr17:29846974(+) A-I      intronic chr17:29846981(+) A-I      intronic chr17:29834147(+) A-I      intronic chr17:29845237(+) A-I      intronic chr17:29830216(+) A-I      intronic chr17:29828686(+) A-I      intronic chr17:29830151(+) A-I      intronic chr17:29830150(+) A-I      intronic chr17:29830144(+) A-I      intronic chr17:29845249(+) A-I      intronic chr17:29774047(+) A-I      intronic chr17:29774070(+) A-I      intronic chr17:29780696(+) A-I      intronic chr17:29807620(+) A-I      intronic chr17:29807644(+) A-I      intronic chr17:29821678(+) A-I      intronic chr17:29822492(+) A-I      intronic chr17:29830290(+) A-I      intronic chr17:29830294(+) A-I      intronic chr17:29831288(+) A-I      intronic chr17:29834136(+) A-I      intronic chr17:29834143(+) A-I      intronic chr17:29845255(+) A-I      intronic chr17:29845951(+) A-I      intronic chr17:29845980(+) A-I      intronic chr17:29862164(+) A-I      3'UTR chr17:29862214(+) A-I      3'UTR chr17:29790591(+) A-I      intronic chr17:29777529(+) A-I      intronic chr17:29847798(+) A-I      intronic chr17:29781473(+) A-I      intronic chr17:29776824(+) A-I      intronic chr17:29787848(+) A-I      intronic chr17:29822493(+) A-I      intronic chr17:29773912(+) A-I      intronic chr17:29846973(+) A-I      intronic chr17:29773913(+) A-I      intronic chr17:29801530(+) A-I      intronic chr17:29829055(+) A-I      intronic chr17:29756096(+) A-I      intronic chr17:29830234(+) A-I      intronic chr17:29795594(+) A-I      intronic chr17:29847095(+) A-I      intronic chr17:29766758(+) A-I      intronic chr17:29780732(+) A-I      intronic chr17:29775330(+) A-I      intronic chr17:29810989(+) A-I      intronic chr17:29845253(+) A-I      intronic chr17:29768306(+) A-I      intronic chr17:29813394(+) A-I      intronic chr17:29846967(+) A-I      intronic chr17:29781887(+) A-I      intronic chr17:29824204(+) A-I      intronic chr17:29824221(+) A-I      intronic chr17:29787882(+) A-I      intronic chr17:29798220(+) A-I      intronic chr17:29798305(+) A-I      intronic chr17:29787842(+) A-I      intronic chr17:29775470(+) A-I      intronic chr17:29777598(+) A-I      intronic chr17:29750447(+) A-I      intronic chr17:29846971(+) A-I      intronic chr17:29788717(+) A-I      intronic chr17:29809480(+) A-I      intronic chr17:29780729(+) A-I      intronic chr17:29846970(+) A-I      intronic chr17:29861303(+) A-I      3'UTR chr17:29861425(+) A-I      3'UTR chr17:29749180(+) A-I      intronic chr17:29780339(+) A-I      intronic chr17:29863284(+) A-I      3'UTR chr17:29862208(+) A-I      3'UTR chr17:29810049(+) A-I      intronic chr17:29861533(+) A-I      3'UTR chr17:29861305(+) A-I      3'UTR chr17:29862198(+) A-I      3'UTR chr17:29809488(+) A-I      intronic chr17:29861476(+) A-I      3'UTR chr17:29801761(+) A-I      intronic chr17:29830265(+) A-I      intronic chr17:29861546(+) A-I      3'UTR chr17:29862251(+) A-I      3'UTR chr17:29861386(+) A-I      3'UTR chr17:29768650(+) A-I      intronic chr17:29788660(+) A-I      intronic chr17:29801781(+) A-I      intronic chr17:29846881(+) A-I      intronic chr17:29810046(+) A-I      intronic chr17:29798106(+) A-I      intronic chr17:29768079(+) A-I      intronic chr17:29861528(+) A-I      3'UTR chr17:29862183(+) A-I      3'UTR chr17:29847732(+) A-I      intronic chr17:29861516(+) A-I      3'UTR chr17:29861555(+) A-I      3'UTR chr17:29837918(+) A-I      intronic chr17:29776851(+) A-I      intronic chr17:29862182(+) A-I      3'UTR chr17:29861307(+) A-I      3'UTR chr17:29847022(+) A-I      intronic chr17:29749148(+) A-I      intronic chr17:29778362(+) A-I      intronic chr17:29778330(+) A-I      intronic chr17:29861557(+) A-I      3'UTR chr17:29862217(+) A-I      3'UTR chr17:29861379(+) A-I      3'UTR chr17:29861390(+) A-I      3'UTR chr17:29777560(+) A-I      intronic chr17:29799796(+) A-I      intronic chr17:29723082(+) A-I      intronic chr17:29781475(+) A-I      intronic chr17:29775459(+) A-I      intronic chr17:29822441(+) A-I      intronic chr17:29747349(+) A-I      intronic chr17:29861543(+) A-I      3'UTR chr17:29861431(+) A-I      3'UTR chr17:29730384(+) A-I      intronic chr17:29862191(+) A-I      3'UTR chr17:29769844(+) A-I      intronic chr17:29862160(+) A-I      3'UTR chr17:29847691(+) A-I      intronic chr17:29780360(+) A-I      intronic chr17:29861470(+) A-I      3'UTR chr17:29861461(+) A-I      3'UTR chr17:29799930(+) A-I      intronic chr17:29832841(+) A-I      intronic chr17:29829437(+) A-I      intronic chr17:29799773(+) A-I      intronic chr17:29811351(+) A-I      intronic chr17:29847096(+) A-I      intronic chr17:29863251(+) A-I      3'UTR chr17:29809431(+) A-I      intronic chr17:29861312(+) A-I      3'UTR chr17:29834700(+) A-I      intronic chr17:29862202(+) A-I      3'UTR chr17:29759886(+) A-I      intronic chr17:29853841(+) A-I      intronic chr17:29863279(+) A-I      3'UTR chr17:29776672(+) A-I      intronic chr17:29809456(+) A-I      intronic chr17:29861515(+) A-I      3'UTR chr17:29780722(+) A-I      intronic chr17:29774573(+) A-I      intronic chr17:29769858(+) A-I      intronic chr17:29846984(+) A-I      intronic chr17:29800300(+) A-I      intronic chr17:29780735(+) A-I      intronic chr17:29829432(+) A-I      intronic chr17:29730601(+) A-I      intronic chr17:29846876(+) A-I      intronic chr17:29832981(+) A-I      intronic chr17:29767531(+) A-I      intronic chr17:29780284(+) A-I      intronic chr17:29848078(+) A-I      intronic chr17:29723157(+) A-I      intronic chr17:29829004(+) A-I      intronic chr17:29766917(+) A-I      intronic chr17:29748354(+) A-I      intronic chr17:29769904(+) A-I      intronic chr17:29801474(+) A-I      intronic chr17:29777546(+) A-I      intronic chr17:29829083(+) A-I      intronic chr17:29808391(+) A-I      intronic chr17:29831469(+) A-I      intronic chr17:29798102(+) A-I      intronic chr17:29847786(+) A-I      intronic chr17:29723087(+) A-I      intronic chr17:29749072(+) A-I      intronic chr17:29768646(+) A-I      intronic chr17:29774870(+) A-I      intronic chr17:29801739(+) A-I      intronic chr17:29829244(+) A-I      intronic chr17:29829084(+) A-I      intronic chr17:29796456(+) A-I      intronic chr17:29774335(+) A-I      intronic chr17:29796457(+) A-I      intronic chr17:29798357(+) A-I      intronic chr17:29854621(+) A-I      intronic chr17:29847354(+) A-I      intronic chr17:29793027(+) A-I      intronic chr17:29748306(+) A-I      intronic chr17:29798292(+) A-I      intronic chr17:29728552(+) A-I      intronic chr17:29759884(+) A-I      intronic chr17:29829435(+) A-I      intronic chr17:29811031(+) A-I      intronic chr17:29845256(+) A-I      intronic chr17:29845233(+) A-I      intronic chr17:29774500(+) A-I      intronic chr17:29847692(+) A-I      intronic chr17:29800302(+) A-I      intronic chr17:29788714(+) A-I      intronic chr17:29807353(+) A-I      intronic chr17:29787861(+) A-I      intronic chr17:29862378(+) A-I      3'UTR chr17:29861561(+) A-I      3'UTR chr17:29862457(+) A-I      3'UTR chr17:29861385(+) A-I      3'UTR chr17:29863258(+) A-I      3'UTR chr17:29861404(+) A-I      3'UTR chr17:29861309(+) A-I      3'UTR chr17:29863257(+) A-I      3'UTR chr17:29863274(+) A-I      3'UTR chr17:29862338(+) A-I      3'UTR chr17:29863280(+) A-I      3'UTR chr17:29861403(+) A-I      3'UTR chr17:29861341(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RAB11FIP4	chr17:29861386(+) A-I exon 3'UTR    15342557 chr17:29861403(+) A-I exon 3'UTR    15342557 chr17:29861404(+) A-I exon 3'UTR    15342557 chr17:29861425(+) A-I exon 3'UTR    15342557 chr17:29861470(+) A-I exon 3'UTR    15342557 chr17:29861528(+) A-I exon 3'UTR    15342557 chr17:29862208(+) A-I exon 3'UTR    15342557 chr17:29863257(+) A-I exon 3'UTR    15258596 chr17:29863258(+) A-I exon 3'UTR    15258596 chr17:29863284(+) A-I exon 3'UTR    15258596 chr17:29861303(+) A-I intron -    22327324 chr17:29861303(+) A-G intron -    21725310   //22484847 chr17:29861470(+) A-G intron -    21725310   //22484847 chr17:29861555(+) A-G intron -    21725310   //22484847 chr17:29861461(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RAB11FIP4	chr17:29848218-29848219(+) m6A CDS//exon//intron       - chr17:29848272-29848273(+) m6A CDS//exon//intron       - chr17:29848296-29848297(+) m6A CDS//exon//intron       - chr17:29848331-29848332(+) m6A CDS//exon//intron       - chr17:29848337-29848338(+) m6A CDS//exon//intron       - chr17:29849051-29849052(+) m6A CDS//exon       - chr17:29850506-29850507(+) m6A exon//intron       - chr17:29850579-29850580(+) m6A CDS//exon       24209618//24981863 chr17:29850591-29850592(+) m6A CDS//exon       24209618//24981863 chr17:29850655-29850656(+) m6A exon//intron       24209618//24981863 chr17:29850712-29850713(+) m6A exon//intron       24209618 chr17:29850721-29850722(+) m6A exon//intron       24209618 chr17:29850968-29850969(+) m6A CDS//exon       24209618//24981863 chr17:29850995-29850996(+) m6A CDS//exon       24209618//24981863 chr17:29851059-29851060(+) m6A exon//intron       24209618//24981863 chr17:29851084-29851085(+) m6A exon//intron       24209618 chr17:29852144-29852145(+) m6A CDS//exon       24209618//25456834 chr17:29852283-29852284(+) m6A exon//intron       24209618 chr17:29854601-29854602(+) m6A exon//intron       24209618 chr17:29854896-29854897(+) m6A CDS//exon       24209618 chr17:29854923-29854924(+) m6A CDS       24209618 chr17:29854931-29854932(+) m6A CDS       24209618 chr17:29855454-29855455(+) m6A CDS       24209618//24981863 chr17:29855484-29855485(+) m6A CDS       24209618//24981863 chr17:29855505-29855506(+) m6A CDS       24209618//24981863 chr17:29855520-29855521(+) m6A CDS       24209618//24981863 chr17:29855647-29855648(+) m6A CDS       24209618 chr17:29855689-29855690(+) m6A CDS       24209618 chr17:29857419-29857420(+) m6A CDS       24284625//24209618 chr17:29857436-29857437(+) m6A CDS       24284625//24209618 chr17:29857467-29857468(+) m6A CDS       24284625//24209618 chr17:29858078-29858079(+) m6A exon//intron       24209618 chr17:29858112-29858113(+) m6A exon//intron       24209618 chr17:29858691-29858692(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr17:29858715-29858716(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr17:29858743-29858744(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr17:29858781-29858782(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr17:29858789-29858790(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr17:29858800-29858801(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr17:29864757-29864758(+) m6A 3'UTR       24209618 chr17:29864796-29864797(+) m6A 3'UTR       24209618 chr17:29864853-29864854(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr17:29864926-29864927(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr17:29865023-29865024(+) m6A 3'UTR       24209618//25456834//22608085 chr17:29865051-29865052(+) m6A 3'UTR       24209618//25456834 chr17:29865078-29865079(+) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RAB11FIP4	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Nasopharyngeal carcinoma cells     20498841 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-3p
Interactor2: RAB11FIP4

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg