Basic Information:

  VIRBase ID:  

VHID00195633

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-3p:  MIMAT0014706          MYCBP:  NR_037632     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-3p	MYCBP
miRBase Accession/Entrez ID	MIMAT0014706	26292
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AMY-1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MYCBP	chr1:39337225(-) A-I      intronic chr1:39336801(-) A-I      intronic chr1:39337226(-) A-I      intronic chr1:39337173(-) A-I      intronic chr1:39337181(-) A-I      intronic chr1:39337191(-) A-I      intronic chr1:39337217(-) A-I      intronic chr1:39334925(-) A-I      intronic chr1:39331417(-) A-I      intronic chr1:39336830(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	MYCBP	chr1:39328677-39328678(-) m6A 3'UTR       27773535 chr1:39328688-39328689(-) m6A 3'UTR       27773535 chr1:39328720-39328721(-) m6A 3'UTR       27773535 chr1:39328763-39328764(-) m6A 3'UTR       27773535 chr1:39329357-39329358(-) m6A 3'UTR       24981863 chr1:39329400-39329401(-) m6A 3'UTR       24981863 chr1:39333250-39333251(-) m6A CDS//exon//intron       - chr1:39333259-39333260(-) m6A CDS//exon//intron       - chr1:39338703-39338704(-) m6A CDS//exon       24284625//24981863 chr1:39338826-39338827(-) m6A exon//intron       24284625//24981863 chr1:39338997-39338998(-) Y 5'UTR//exon//intron       26075521 chr1:39339112-39339113(-) m6A 5'UTR       24981863 chr1:39339271-39339272(-) m6A 5'UTR       24284625//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MYCBP	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-3p
Interactor2: MYCBP

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg