Basic Information:

  VIRBase ID:  

VHID00195542

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-3p:  MIMAT0014706          SKI:  NM_003036     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-3p	SKI
miRBase Accession/Entrez ID	MIMAT0014706	6497
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SGS//SKV

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SKI	chr1:2195382(+) A-I      intronic chr1:2239840(+) A-I      3'UTR chr1:2239844(+) A-I      3'UTR chr1:2239845(+) A-I      3'UTR chr1:2239846(+) A-I      3'UTR chr1:2239862(+) A-I      3'UTR chr1:2195381(+) A-I      intronic chr1:2194418(+) A-I      intronic chr1:2194419(+) A-I      intronic chr1:2194438(+) A-I      intronic chr1:2194443(+) A-I      intronic chr1:2195357(+) A-I      intronic chr1:2195359(+) A-I      intronic chr1:2195360(+) A-I      intronic chr1:2239833(+) A-I      3'UTR chr1:2219702(+) A-I      intronic chr1:2227787(+) A-I      intronic chr1:2227730(+) A-I      intronic chr1:2227723(+) A-I      intronic chr1:2172961(+) A-I      intronic chr1:2173094(+) A-I      intronic chr1:2173100(+) A-I      intronic chr1:2175461(+) A-I      intronic chr1:2175568(+) A-I      intronic chr1:2175665(+) A-I      intronic chr1:2175677(+) A-I      intronic chr1:2175869(+) A-I      intronic chr1:2175939(+) A-I      intronic chr1:2175971(+) A-I      intronic chr1:2219700(+) A-I      intronic chr1:2178442(+) A-I      intronic chr1:2178444(+) A-I      intronic chr1:2178445(+) A-I      intronic chr1:2178554(+) A-I      intronic chr1:2178564(+) A-I      intronic chr1:2184350(+) A-I      intronic chr1:2184357(+) A-I      intronic chr1:2184404(+) A-I      intronic chr1:2194359(+) A-I      intronic chr1:2194439(+) A-I      intronic chr1:2194440(+) A-I      intronic chr1:2194456(+) A-I      intronic chr1:2195351(+) A-I      intronic chr1:2195770(+) A-I      intronic chr1:2195847(+) A-I      intronic chr1:2195849(+) A-I      intronic chr1:2195960(+) A-I      intronic chr1:2195979(+) A-I      intronic chr1:2195982(+) A-I      intronic chr1:2196073(+) A-I      intronic chr1:2196349(+) A-I      intronic chr1:2196360(+) A-I      intronic chr1:2196367(+) A-I      intronic chr1:2196513(+) A-I      intronic chr1:2197167(+) A-I      intronic chr1:2197247(+) A-I      intronic chr1:2197303(+) A-I      intronic chr1:2208662(+) A-I      intronic chr1:2216702(+) A-I      intronic chr1:2216737(+) A-I      intronic chr1:2216745(+) A-I      intronic chr1:2216768(+) A-I      intronic chr1:2216781(+) A-I      intronic chr1:2216787(+) A-I      intronic chr1:2217068(+) A-I      intronic chr1:2217190(+) A-I      intronic chr1:2217266(+) A-I      intronic chr1:2217393(+) A-I      intronic chr1:2217454(+) A-I      intronic chr1:2217478(+) A-I      intronic chr1:2217515(+) A-I      intronic chr1:2217527(+) A-I      intronic chr1:2217554(+) A-I      intronic chr1:2217591(+) A-I      intronic chr1:2217764(+) A-I      intronic chr1:2217778(+) A-I      intronic chr1:2217817(+) A-I      intronic chr1:2219545(+) A-I      intronic chr1:2219553(+) A-I      intronic chr1:2219554(+) A-I      intronic chr1:2197248(+) A-I      intronic chr1:2217142(+) A-I      intronic chr1:2175933(+) A-I      intronic chr1:2217585(+) A-I      intronic chr1:2173983(+) A-I      intronic chr1:2211276(+) A-I      intronic chr1:2181525(+) A-I      intronic chr1:2196121(+) A-I      intronic chr1:2197150(+) A-I      intronic chr1:2184319(+) A-I      intronic chr1:2228685(+) A-I      intronic chr1:2217081(+) A-I      intronic chr1:2175522(+) A-I      intronic chr1:2216958(+) A-I      intronic chr1:2175761(+) A-I      intronic chr1:2194620(+) A-I      intronic chr1:2211245(+) A-I      intronic chr1:2208660(+) A-I      intronic chr1:2175589(+) A-I      intronic chr1:2195969(+) A-I      intronic chr1:2217811(+) A-I      intronic chr1:2194928(+) A-I      intronic chr1:2228671(+) A-I      intronic chr1:2194432(+) A-I      intronic chr1:2217267(+) A-I      intronic chr1:2195818(+) A-I      intronic chr1:2178646(+) A-I      intronic chr1:2211552(+) A-I      intronic chr1:2211185(+) A-I      intronic chr1:2175586(+) A-I      intronic chr1:2178543(+) A-I      intronic chr1:2166581(+) A-I      intronic chr1:2197249(+) A-I      intronic chr1:2197173(+) A-I      intronic chr1:2208626(+) A-I      intronic chr1:2195181(+) A-I      intronic chr1:2175860(+) A-I      intronic chr1:2175866(+) A-I      intronic chr1:2175831(+) A-I      intronic chr1:2178570(+) A-I      intronic chr1:2211171(+) A-I      intronic chr1:2216796(+) A-I      intronic chr1:2217751(+) A-I      intronic chr1:2217702(+) A-I      intronic chr1:2175816(+) A-I      intronic chr1:2195748(+) A-I      intronic chr1:2217214(+) A-I      intronic chr1:2194874(+) A-I      intronic chr1:2217800(+) A-I      intronic chr1:2219841(+) A-I      intronic chr1:2175830(+) A-I      intronic chr1:2184256(+) A-I      intronic chr1:2184431(+) A-I      intronic chr1:2217442(+) A-I      intronic chr1:2194950(+) A-I      intronic chr1:2228601(+) A-I      intronic chr1:2211240(+) A-I      intronic chr1:2192028(+) A-I      intronic chr1:2175872(+) A-I      intronic chr1:2195807(+) A-I      intronic chr1:2189234(+) A-I      intronic chr1:2175534(+) A-I      intronic chr1:2197144(+) A-I      intronic chr1:2175611(+) A-I      intronic chr1:2195825(+) A-I      intronic chr1:2217708(+) A-I      intronic chr1:2194938(+) A-I      intronic chr1:2175767(+) A-I      intronic chr1:2175762(+) A-I      intronic chr1:2175863(+) A-I      intronic chr1:2175940(+) A-I      intronic chr1:2217186(+) A-I      intronic chr1:2211704(+) A-I      intronic chr1:2216765(+) A-I      intronic chr1:2217770(+) A-I      intronic chr1:2197251(+) A-I      intronic chr1:2195883(+) A-I      intronic chr1:2195808(+) A-I      intronic chr1:2173071(+) A-I      intronic chr1:2196350(+) A-I      intronic chr1:2175485(+) A-I      intronic chr1:2227562(+) A-I      intronic chr1:2194465(+) A-I      intronic chr1:2195433(+) A-I      intronic chr1:2217103(+) A-I      intronic chr1:2217496(+) A-I      intronic chr1:2227653(+) A-I      intronic chr1:2197300(+) A-I      intronic chr1:2195399(+) A-I      intronic chr1:2197254(+) A-I      intronic chr1:2194464(+) A-I      intronic chr1:2217205(+) A-I      intronic chr1:2216680(+) A-I      intronic chr1:2217716(+) A-I      intronic chr1:2194864(+) A-I      intronic chr1:2195180(+) A-I      intronic chr1:2184265(+) A-I      intronic chr1:2217867(+) A-I      intronic chr1:2173039(+) A-I      intronic chr1:2216750(+) A-I      intronic chr1:2217890(+) A-I      intronic chr1:2175455(+) A-I      intronic chr1:2197286(+) A-I      intronic chr1:2196425(+) A-I      intronic chr1:2217826(+) A-I      intronic chr1:2184467(+) A-I      intronic chr1:2166582(+) A-I      intronic chr1:2217900(+) A-I      intronic chr1:2175509(+) A-I      intronic chr1:2219484(+) A-I      intronic chr1:2175784(+) A-I      intronic chr1:2175807(+) A-I      intronic chr1:2181528(+) A-I      intronic chr1:2175855(+) A-I      intronic chr1:2194614(+) A-I      intronic chr1:2227798(+) A-I      intronic chr1:2197181(+) A-I      intronic chr1:2194514(+) A-I      intronic chr1:2166610(+) A-I      intronic chr1:2227608(+) A-I      intronic chr1:2178573(+) A-I      intronic chr1:2227713(+) A-I      intronic chr1:2228567(+) A-I      intronic chr1:2197322(+) A-I      intronic chr1:2175859(+) A-I      intronic chr1:2211267(+) A-I      intronic chr1:2175987(+) A-I      intronic chr1:2175904(+) A-I      intronic chr1:2175969(+) A-I      intronic chr1:2197328(+) A-I      intronic chr1:2195207(+) A-I      intronic chr1:2219823(+) A-I      intronic chr1:2175783(+) A-I      intronic chr1:2216807(+) A-I      intronic chr1:2217572(+) A-I      intronic chr1:2197151(+) A-I      intronic chr1:2217739(+) A-I      intronic chr1:2219687(+) A-I      intronic chr1:2216766(+) A-I      intronic chr1:2175898(+) A-I      intronic chr1:2203713(+) A-I      intronic chr1:2197264(+) A-I      intronic chr1:2217452(+) A-I      intronic chr1:2175546(+) A-I      intronic chr1:2175755(+) A-I      intronic chr1:2175960(+) A-I      intronic chr1:2175964(+) A-I      intronic chr1:2196074(+) A-I      intronic chr1:2195970(+) A-I      intronic chr1:2174142(+) A-I      intronic chr1:2227593(+) A-I      intronic chr1:2184485(+) A-I      intronic chr1:2217366(+) A-I      intronic chr1:2178406(+) A-I      intronic chr1:2217881(+) A-I      intronic chr1:2175544(+) A-I      intronic chr1:2196494(+) A-I      intronic chr1:2197241(+) A-I      intronic chr1:2227727(+) A-I      intronic chr1:2217601(+) A-I      intronic chr1:2189307(+) A-I      intronic chr1:2175852(+) A-I      intronic chr1:2211693(+) A-I      intronic chr1:2217773(+) A-I      intronic chr1:2216690(+) A-I      intronic chr1:2194860(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SKI	chr1:2166581(+) A-G intron -    22484847 chr1:2166610(+) A-G intron -    22484847 chr1:2175485(+) A-G intron -    22484847 chr1:2175509(+) A-G intron -    22484847 chr1:2175522(+) A-G intron -    22484847 chr1:2175534(+) A-G intron -    22484847 chr1:2175544(+) A-G intron -    22484847 chr1:2175546(+) A-G intron -    22484847 chr1:2175589(+) A-G intron -    22484847 chr1:2175611(+) A-G intron -    22484847 chr1:2175755(+) A-G intron -    22484847 chr1:2175761(+) A-G intron -    22484847 chr1:2175762(+) A-G intron -    22484847 chr1:2175767(+) A-G intron -    22484847 chr1:2175783(+) A-G intron -    22484847 chr1:2175784(+) A-G intron -    22484847 chr1:2175807(+) A-G intron -    22484847 chr1:2175830(+) A-G intron -    22484847 chr1:2175831(+) A-G intron -    22484847 chr1:2175852(+) A-G intron -    22484847 chr1:2175855(+) A-G intron -    22484847 chr1:2175860(+) A-G intron -    22484847 chr1:2175898(+) A-G intron -    22484847 chr1:2175904(+) A-G intron -    22484847 chr1:2175933(+) A-G intron -    22484847 chr1:2175940(+) A-G intron -    22484847 chr1:2177098(+) G-A intron -    22484847 chr1:2178543(+) A-G intron -    22484847 chr1:2184431(+) A-G intron -    22484847 chr1:2184467(+) A-G intron -    22484847 chr1:2184485(+) A-G intron -    22484847 chr1:2194432(+) A-G intron -    22484847 chr1:2194514(+) A-G intron -    22484847 chr1:2195207(+) A-G intron -    22484847 chr1:2195748(+) A-G intron -    22484847 chr1:2195807(+) A-G intron -    22484847 chr1:2195808(+) A-G intron -    22484847 chr1:2195818(+) A-G intron -    22484847 chr1:2195825(+) A-G intron -    22484847 chr1:2195883(+) A-G intron -    22484847 chr1:2195969(+) A-G intron -    22484847 chr1:2195970(+) A-G intron -    22484847 chr1:2196074(+) A-G intron -    22484847 chr1:2196350(+) A-G intron -    22484847 chr1:2196425(+) A-G intron -    22484847 chr1:2197144(+) A-G intron -    22484847 chr1:2197150(+) A-G intron -    22484847 chr1:2197151(+) A-G intron -    22484847 chr1:2197173(+) A-G intron -    22484847 chr1:2197181(+) A-G intron -    22484847 chr1:2197241(+) A-G intron -    22484847 chr1:2197251(+) A-G intron -    22484847 chr1:2208626(+) A-G intron -    22484847 chr1:2216690(+) A-G intron -    22484847 chr1:2216766(+) A-G intron -    22484847 chr1:2216790(+) G-A intron -    22484847 chr1:2217081(+) A-G intron -    22484847 chr1:2217442(+) A-G intron -    22484847 chr1:2217452(+) A-G intron -    22484847 chr1:2217496(+) A-G intron -    22484847 chr1:2217585(+) A-G intron -    22484847 chr1:2217770(+) A-G intron -    22484847 chr1:2227562(+) A-G intron -    22484847 chr1:2228671(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SKI	chr1:2160511-2160512(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:2160529-2160530(+) m6A CDS       24284625//25456834//24981863//22575960//22608085 chr1:2160950-2160951(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2161010-2161011(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2161015-2161016(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2163974-2163975(+) m6A exon//intron       24284625 chr1:2172146-2172147(+) Tm intron       - chr1:2234445-2234446(+) m6A CDS//exon       24284625 chr1:2234452-2234453(+) m6A CDS//exon       24284625 chr1:2234495-2234496(+) m6A CDS//exon       24284625 chr1:2234518-2234519(+) m6A CDS//exon       24284625 chr1:2234835-2234836(+) m6A CDS       24284625 chr1:2235104-2235105(+) m6A exon//intron       24284625 chr1:2235141-2235142(+) m6A exon//intron       24284625 chr1:2235241-2235242(+) m6A exon//intron       - chr1:2235303-2235304(+) m6A CDS//exon       24284625 chr1:2235445-2235446(+) m6A CDS//exon       24284625 chr1:2235496-2235497(+) m6A CDS//exon       24284625 chr1:2235502-2235503(+) m6A CDS//exon       24284625 chr1:2235791-2235792(+) m6A CDS//exon       - chr1:2235917-2235918(+) m6A CDS       24209618//24981863//22575960 chr1:2238022-2238023(+) m6A CDS       24209618//24981863//22575960 chr1:2238055-2238056(+) m6A CDS       24209618//24981863//22575960 chr1:2238137-2238138(+) m6A CDS       24209618//25456834//22575960 chr1:2238361-2238362(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:2238471-2238472(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2238510-2238511(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2238522-2238523(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2238597-2238598(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2238683-2238684(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2238727-2238728(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2238763-2238764(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2238790-2238791(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2239085-2239086(+) m6A 3'UTR       24284625//24981863//22575960//22608085 chr1:2239105-2239106(+) m6A 3'UTR       24284625//24981863//22575960//22608085 chr1:2239171-2239172(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:2239218-2239219(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:2239276-2239277(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:2239298-2239299(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:2239331-2239332(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:2239336-2239337(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:2239553-2239554(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr1:2239722-2239723(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr1:2239729-2239730(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2239850-2239851(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr1:2240224-2240225(+) m6A 3'UTR       24284625 chr1:2240458-2240459(+) m6A 3'UTR       24284625 chr1:2240485-2240486(+) m6A 3'UTR       24284625 chr1:2240585-2240586(+) m6A 3'UTR       24284625 chr1:2241429-2241430(+) m6A 3'UTR       24981863 chr1:2241497-2241498(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SKI	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-3p
Interactor2: SKI

Evidence Support:

Prediction-Evidence	miRanda//PITA//Targetscan
Support Database	VmiReg