Basic Information:

  VIRBase ID:  

VHID00195400

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:  MIMAT0014705          VMAC:  NM_001017921     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-5p	VMAC
miRBase Accession/Entrez ID	MIMAT0014705	400673
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	VMAC	chr19:5907709(+) A-I      intronic chr19:5907699(+) A-I      intronic chr19:5907676(+) A-I      intronic chr19:5905953(+) A-I      intronic chr19:5905944(+) A-I      intronic chr19:5905940(+) A-I      intronic chr19:5905835(+) A-I      intronic chr19:5905831(+) A-I      intronic chr19:5905818(+) A-I      intronic chr19:5905805(+) A-I      intronic chr19:5907718(+) A-I      intronic chr19:5910015(+) A-I      3'UTR chr19:5905941(+) A-I      intronic chr19:5909656(+) A-I      3'UTR chr19:5908516(+) A-I      intronic chr19:5908512(+) A-I      intronic chr19:5906963(+) A-I      intronic chr19:5906944(+) A-I      intronic chr19:5905695(+) A-I      intronic chr19:5905684(+) A-I      intronic chr19:5905560(+) A-I      intronic chr19:5905694(+) A-I      intronic chr19:5908568(+) A-I      intronic chr19:5909627(+) A-I      3'UTR chr19:5909632(+) A-I      3'UTR chr19:5909777(+) A-I      3'UTR chr19:5909710(+) A-I      3'UTR chr19:5908490(+) A-I      intronic chr19:5907686(+) A-I      intronic chr19:5906116(+) A-I      intronic chr19:5907552(+) A-I      intronic chr19:5907754(+) A-I      intronic chr19:5908121(+) A-I      intronic chr19:5905440(+) A-I      intronic chr19:5909721(+) A-I      3'UTR chr19:5906781(+) A-I      intronic chr19:5906927(+) A-I      intronic chr19:5909571(+) A-I      3'UTR chr19:5909722(+) A-I      3'UTR chr19:5906047(+) A-I      intronic chr19:5908547(+) A-I      intronic chr19:5909672(+) A-I      3'UTR chr19:5909591(+) A-I      3'UTR chr19:5906780(+) A-I      intronic chr19:5909661(+) A-I      3'UTR chr19:5909620(+) A-I      3'UTR chr19:5909590(+) A-I      3'UTR chr19:5908364(+) A-I      intronic chr19:5908202(+) A-I      intronic chr19:5909783(+) A-I      3'UTR chr19:5909514(+) A-I      3'UTR chr19:5909564(+) A-I      3'UTR chr19:5909510(+) A-I      3'UTR chr19:5909784(+) A-I      3'UTR chr19:5907526(+) A-I      intronic chr19:5909730(+) A-I      3'UTR chr19:5909584(+) A-I      3'UTR chr19:5909707(+) A-I      3'UTR chr19:5908082(+) A-I      intronic chr19:5909546(+) A-I      3'UTR chr19:5909648(+) A-I      3'UTR chr19:5908562(+) A-I      intronic chr19:5905987(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	VMAC	chr19:5909509(+) A-I exon 3'UTR    15342557 chr19:5909510(+) A-I exon 3'UTR    15342557 chr19:5909522(+) A-I exon 3'UTR    15342557 chr19:5909564(+) A-I exon 3'UTR    15342557 chr19:5909565(+) A-I exon 3'UTR    15342557 chr19:5909584(+) A-I exon 3'UTR    15342557 chr19:5909672(+) A-I exon 3'UTR    15342557 chr19:5909707(+) A-I exon 3'UTR    15342557 chr19:5909721(+) A-I exon 3'UTR    15342557 chr19:5909722(+) A-I exon 3'UTR    15342557 chr19:5909723(+) A-I exon 3'UTR    15342557 chr19:5909783(+) A-I exon 3'UTR    15342557   //21960545 chr19:5909784(+) A-I exon 3'UTR    15342557 chr19:5909571(+) A-I intron -    22327324 chr19:5908254(+) T-C intron -    22484847 chr19:5909571(+) A-G intron -    22484847 chr19:5909620(+) A-G intron -    22484847 chr19:5909661(+) A-G intron -    22484847 chr19:5909721(+) A-G intron -    22484847 chr19:5909722(+) A-G intron -    22484847 chr19:5909723(+) A-G intron -    22484847 chr19:5909783(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	VMAC	chr19:5905071-5905072(+) m6A CDS       - chr19:5905088-5905089(+) m6A CDS       25456834 chr19:5908959-5908960(+) m6A CDS       25456834//24981863 chr19:5909109-5909110(+) m6A CDS       24284625//25456834//24981863//22608085 chr19:5909115-5909116(+) m6A CDS       24284625//25456834//24981863//22608085 chr19:5909141-5909142(+) m6A CDS       24284625//25456834//24981863//22608085 chr19:5909180-5909181(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr19:5909234-5909235(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr19:5909272-5909273(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr19:5909281-5909282(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr19:5909336-5909337(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr19:5909389-5909390(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr19:5909403-5909404(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr19:5909429-5909430(+) m6A 3'UTR       22608085 chr19:5909927-5909928(+) m6A 3'UTR       22608085 chr19:5909944-5909945(+) m6A 3'UTR       22608085 chr19:5910018-5910019(+) m6A 3'UTR       25456834//22608085 chr19:5910033-5910034(+) m6A 3'UTR       25456834//22608085 chr19:5910060-5910061(+) m6A 3'UTR       25456834//22608085 chr19:5910171-5910172(+) m6A 3'UTR       25456834//22608085 chr19:5910235-5910236(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	VMAC	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-5p
Interactor2: VMAC

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg