Basic Information:

  VIRBase ID:  

VHID00195299

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:  MIMAT0014705          SLC25A45:  NM_001077241     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-5p	SLC25A45
miRBase Accession/Entrez ID	MIMAT0014705	283130
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SLC25A45	chr11:65143364(-) A-I      3'UTR chr11:65143515(-) A-I      3'UTR chr11:65143385(-) A-I      3'UTR chr11:65143539(-) A-I      3'UTR chr11:65143360(-) A-I      3'UTR chr11:65143503(-) A-I      3'UTR chr11:65143375(-) A-I      3'UTR chr11:65143450(-) A-I      3'UTR chr11:65143519(-) A-I      3'UTR chr11:65143446(-) A-I      3'UTR chr11:65143277(-) A-I      3'UTR chr11:65148766(-) A-I      intronic chr11:65148730(-) A-I      intronic chr11:65148677(-) A-I      intronic chr11:65149037(-) A-I      intronic chr11:65143507(-) A-I      3'UTR chr11:65143494(-) A-I      3'UTR chr11:65143393(-) A-I      3'UTR chr11:65143352(-) A-I      3'UTR chr11:65143366(-) A-I      3'UTR chr11:65143451(-) A-I      3'UTR chr11:65143337(-) A-I      3'UTR chr11:65143389(-) A-I      3'UTR chr11:65143369(-) A-I      3'UTR chr11:65143411(-) A-I      3'UTR chr11:65143289(-) A-I      3'UTR chr11:65143384(-) A-I      3'UTR chr11:65143421(-) A-I      3'UTR chr11:65143290(-) A-I      3'UTR chr11:65143344(-) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SLC25A45	chr11:65143289(-) A-I exon 3'UTR    15342557   //22327324 chr11:65143290(-) A-I exon 3'UTR    15342557 chr11:65143337(-) A-I exon 3'UTR    15342557   //15258596 chr11:65143344(-) A-I exon 3'UTR    15342557   //15258596 chr11:65143349(-) A-I exon 3'UTR    15342557   //15258596 chr11:65143352(-) A-I exon 3'UTR    15342557 chr11:65143360(-) A-I exon 3'UTR    15342557   //15258596 chr11:65143369(-) A-I exon 3'UTR    15342557 chr11:65143384(-) A-I exon 3'UTR    15342557 chr11:65143385(-) A-I exon 3'UTR    15342557 chr11:65143389(-) A-I exon 3'UTR    15342557   //15258596 chr11:65143393(-) A-I exon 3'UTR    15342557   //15258596   //22327324 chr11:65143411(-) A-I exon 3'UTR    15342557   //15258596 chr11:65143421(-) A-I exon 3'UTR    15342557   //15258596   //22327324 chr11:65143450(-) A-I exon 3'UTR    15342557   //15258596 chr11:65143451(-) A-I exon 3'UTR    15342557   //15258596 chr11:65143507(-) A-I exon 3'UTR    15342557   //15258596 chr11:65143539(-) A-I exon 3'UTR    15342557   //15258596 chr11:65144075(-) A-I exon CDS    15342557 chr11:65143507(-) A-G exon 3'UTR    21725310 chr11:65143277(-) A-G exon 3'UTR    22484847 chr11:65143289(-) A-G exon 3'UTR    22484847 chr11:65143290(-) A-G exon 3'UTR    22484847 chr11:65143369(-) A-G exon 3'UTR    22484847 chr11:65143421(-) A-G exon 3'UTR    22484847 chr11:65148858(-) G-C intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SLC25A45	chr11:65142695-65142696(-) m6A 3'UTR//exon       24981863//27773535 chr11:65142760-65142761(-) m6A 3'UTR//exon       24284625//24981863//28052920//27773535 chr11:65142846-65142847(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535 chr11:65142920-65142921(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535 chr11:65143017-65143018(-) m6A 3'UTR//exon       24284625 chr11:65143024-65143025(-) m6A 3'UTR//exon       24284625 chr11:65143089-65143090(-) m6A 3'UTR//exon       27773535 chr11:65143224-65143225(-) m6A 3'UTR//exon       27773535 chr11:65143982-65143983(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//28052920//27371828//22575960//22608085 chr11:65144013-65144014(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27371828//22575960//22608085 chr11:65144045-65144046(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085 chr11:65144076-65144077(-) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//28052920//27773535//27371828//22575960 chr11:65145206-65145207(-) m6A exon//intron       27773535 chr11:65145301-65145302(-) m6A exon//intron       24981863//27773535 chr11:65145319-65145320(-) m6A exon//intron       24981863//27773535 chr11:65145339-65145340(-) m6A exon//intron       24981863//27773535 chr11:65145358-65145359(-) m6A exon//intron       24981863//27773535 chr11:65145373-65145374(-) m6A exon//intron       24981863//27773535 chr11:65145398-65145399(-) m6A exon//intron       24981863//27773535 chr11:65145487-65145488(-) m6A exon//intron       24981863//27773535 chr11:65145497-65145498(-) m6A exon//intron       24981863//27773535 chr11:65145507-65145508(-) m6A exon//intron       27773535 chr11:65146062-65146063(-) m6A exon//intron       - chr11:65146105-65146106(-) m6A exon//intron       - chr11:65146112-65146113(-) m6A exon//intron       - chr11:65150238-65150239(-) m1A 5'UTR       26863196

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SLC25A45	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-5p
Interactor2: SLC25A45

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg