Basic Information:

  VIRBase ID:  

VHID00195238

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:  MIMAT0014705          ACSF3:  NR_147928     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-5p	ACSF3
miRBase Accession/Entrez ID	MIMAT0014705	197322
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ACSF3	chr16:89191608(+) A-I      intronic chr16:89218864(+) A-I      intronic chr16:89218857(+) A-I      intronic chr16:89191617(+) A-I      intronic chr16:89191612(+) A-I      intronic chr16:89191566(+) A-I      intronic chr16:89191568(+) A-I      intronic chr16:89191571(+) A-I      intronic chr16:89191604(+) A-I      intronic chr16:89191600(+) A-I      intronic chr16:89191599(+) A-I      intronic chr16:89191598(+) A-I      intronic chr16:89191562(+) A-I      intronic chr16:89218286(+) A-I      intronic chr16:89218254(+) A-I      intronic chr16:89218236(+) A-I      intronic chr16:89218198(+) A-I      intronic chr16:89218180(+) A-I      intronic chr16:89218156(+) A-I      intronic chr16:89218144(+) A-I      intronic chr16:89218132(+) A-I      intronic chr16:89218115(+) A-I      intronic chr16:89218101(+) A-I      intronic chr16:89218089(+) A-I      intronic chr16:89218076(+) A-I      intronic chr16:89197651(+) A-I      intronic chr16:89197646(+) A-I      intronic chr16:89197597(+) A-I      intronic chr16:89197573(+) A-I      intronic chr16:89196967(+) A-I      intronic chr16:89196964(+) A-I      intronic chr16:89196806(+) A-I      intronic chr16:89196772(+) A-I      intronic chr16:89195429(+) A-I      intronic chr16:89195352(+) A-I      intronic chr16:89195288(+) A-I      intronic chr16:89195281(+) A-I      intronic chr16:89194769(+) A-I      intronic chr16:89194749(+) A-I      intronic chr16:89193887(+) A-I      intronic chr16:89193873(+) A-I      intronic chr16:89193872(+) A-I      intronic chr16:89193847(+) A-I      intronic chr16:89191979(+) A-I      intronic chr16:89191978(+) A-I      intronic chr16:89191527(+) A-I      intronic chr16:89176072(+) A-I      intronic chr16:89176058(+) A-I      intronic chr16:89176010(+) A-I      intronic chr16:89176003(+) A-I      intronic chr16:89175851(+) A-I      intronic chr16:89175627(+) A-I      intronic chr16:89175497(+) A-I      intronic chr16:89175431(+) A-I      intronic chr16:89175421(+) A-I      intronic chr16:89175379(+) A-I      intronic chr16:89166105(+) A-I      intronic chr16:89165940(+) A-I      intronic chr16:89218176(+) A-I      intronic chr16:89218036(+) A-I      intronic chr16:89218928(+) A-I      intronic chr16:89218925(+) A-I      intronic chr16:89218912(+) A-I      intronic chr16:89218873(+) A-I      intronic chr16:89218860(+) A-I      intronic chr16:89218791(+) A-I      intronic chr16:89218885(+) A-I      intronic chr16:89218760(+) A-I      intronic chr16:89218292(+) A-I      intronic chr16:89218973(+) A-I      intronic chr16:89218865(+) A-I      intronic chr16:89218108(+) A-I      intronic chr16:89219003(+) A-I      intronic chr16:89175920(+) A-I      intronic chr16:89175560(+) A-I      intronic chr16:89175937(+) A-I      intronic chr16:89218982(+) A-I      intronic chr16:89218181(+) A-I      intronic chr16:89219213(+) A-I      intronic chr16:89218200(+) A-I      intronic chr16:89218895(+) A-I      intronic chr16:89218905(+) A-I      intronic chr16:89218154(+) A-I      intronic chr16:89218114(+) A-I      intronic chr16:89218817(+) A-I      intronic chr16:89195449(+) A-I      intronic chr16:89176275(+) A-I      intronic chr16:89218936(+) A-I      intronic chr16:89218289(+) A-I      intronic chr16:89218851(+) A-I      intronic chr16:89192946(+) A-I      intronic chr16:89218961(+) A-I      intronic chr16:89218937(+) A-I      intronic chr16:89161231(+) A-I      intronic chr16:89218253(+) A-I      intronic chr16:89218195(+) A-I      intronic chr16:89218960(+) A-I      intronic chr16:89218840(+) A-I      intronic chr16:89218761(+) A-I      intronic chr16:89218830(+) A-I      intronic chr16:89218796(+) A-I      intronic chr16:89218806(+) A-I      intronic chr16:89218754(+) A-I      intronic chr16:89197706(+) A-I      intronic chr16:89218225(+) A-I      intronic chr16:89175525(+) A-I      intronic chr16:89197673(+) A-I      intronic chr16:89218869(+) A-I      intronic chr16:89218838(+) A-I      intronic chr16:89175520(+) A-I      intronic chr16:89218901(+) A-I      intronic chr16:89218250(+) A-I      intronic chr16:89218839(+) A-I      intronic chr16:89202404(+) A-I      intronic chr16:89176224(+) A-I      intronic chr16:89222150(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ACSF3	chr16:89214972(+) A-I intron -    15342557 chr16:89215404(+) A-I intron -    15342557 chr16:89218108(+) A-I intron -    15342557   //15258596 chr16:89218114(+) A-I intron -    15342557   //15258596 chr16:89218225(+) A-I intron -    15342557   //22327324 chr16:89218289(+) A-I intron -    15342557 chr16:89218754(+) A-I intron -    15342557   //15258596 chr16:89218760(+) A-I intron -    15342557   //15258596 chr16:89218761(+) A-I intron -    15342557   //15258596 chr16:89218796(+) A-I intron -    15342557   //15258596 chr16:89218806(+) A-I intron -    15342557   //15258596 chr16:89218830(+) A-I intron -    15342557   //15258596 chr16:89218838(+) A-I intron -    15342557   //15258596 chr16:89218839(+) A-I intron -    15342557   //15258596 chr16:89218840(+) A-I intron -    15342557   //15258596 chr16:89218851(+) A-I intron -    15342557 chr16:89218865(+) A-I intron -    15342557   //15258596 chr16:89218869(+) A-I intron -    15342557   //15258596 chr16:89218895(+) A-I intron -    15342557   //15258596 chr16:89218905(+) A-I intron -    15342557   //15258596   //22327324 chr16:89218936(+) A-I intron -    15342557   //15258596 chr16:89218937(+) A-I intron -    15258596 chr16:89218960(+) A-I intron -    15342557   //15258596 chr16:89218973(+) A-I intron -    15342557   //15258596

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ACSF3	chr16:89160272-89160273(+) m6A 5'UTR//intron       24981863 chr16:89160303-89160304(+) m6A 5'UTR//intron       24981863 chr16:89160314-89160315(+) m6A 5'UTR//intron       24981863 chr16:89161612-89161613(+) m6A 5'UTR//intron       24284625 chr16:89161655-89161656(+) m6A 5'UTR//intron       24284625 chr16:89161673-89161674(+) m6A 5'UTR//intron       24284625 chr16:89161691-89161692(+) m6A 5'UTR//intron       24284625 chr16:89165127-89165128(+) m6A 5'UTR//intron       24284625 chr16:89165134-89165135(+) m6A 5'UTR//intron       24284625 chr16:89167163-89167164(+) m6A CDS//intron       24284625//25456834//24981863//22575960//22608085 chr16:89167210-89167211(+) m6A CDS//intron       24284625//25456834//24981863//22575960//22608085 chr16:89167252-89167253(+) m6A CDS//intron       24284625//25456834//24981863//22575960//22608085 chr16:89167363-89167364(+) m6A CDS//intron       24284625//25456834//24981863//22575960//22608085 chr16:89167631-89167632(+) m6A CDS//intron       24284625//25456834//24981863//27371828//22608085 chr16:89167669-89167670(+) m6A CDS//intron       24284625//25456834//24981863//27371828//22608085 chr16:89167701-89167702(+) m6A CDS//intron       24284625//25456834//24981863//27371828//22608085 chr16:89167741-89167742(+) m6A CDS//intron       24284625//25456834//24981863//27371828//22608085 chr16:89169041-89169042(+) m6A 5'UTR//CDS       24284625//25456834//22608085 chr16:89187219-89187220(+) m6A CDS//exon       24284625 chr16:89187259-89187260(+) m6A CDS//exon       24284625 chr16:89187315-89187316(+) m6A CDS//exon       24284625 chr16:89189221-89189222(+) m6A 3'UTR//intron       24981863 chr16:89189226-89189227(+) m6A 3'UTR//intron       24981863 chr16:89199590-89199591(+) m6A 3'UTR//CDS//exon       24981863 chr16:89199620-89199621(+) m6A 3'UTR//CDS//exon       24284625//24981863 chr16:89199630-89199631(+) m6A 3'UTR//CDS//exon       24284625//24981863 chr16:89199666-89199667(+) m6A 3'UTR//CDS//exon       24284625//24981863 chr16:89214729-89214730(+) m6A exon//intron       - chr16:89216545-89216546(+) m6A exon//intron       - chr16:89216661-89216662(+) m6A exon//intron       24284625 chr16:89216771-89216772(+) m6A exon//intron       27371828 chr16:89216848-89216849(+) m6A exon//intron       24284625//25456834//27371828 chr16:89216907-89216908(+) m6A exon//intron       24284625//25456834//27371828 chr16:89216931-89216932(+) m6A exon//intron       24284625//25456834//27371828 chr16:89217020-89217021(+) m6A exon//intron       24284625//25456834//27371828//22608085 chr16:89217086-89217087(+) m6A exon//intron       24284625//25456834//27371828//22608085 chr16:89217091-89217092(+) m6A exon//intron       24284625//25456834//27371828//22608085 chr16:89217133-89217134(+) m6A exon//intron       24284625//25456834//27371828//22608085 chr16:89217258-89217259(+) m6A exon//intron       24284625//27371828 chr16:89217296-89217297(+) m6A exon//intron       24284625//27371828 chr16:89217413-89217414(+) m6A exon//intron       24284625 chr16:89217444-89217445(+) m6A CDS//exon//intron       24284625 chr16:89217467-89217468(+) m6A CDS//exon//intron       24284625 chr16:89217497-89217498(+) m6A CDS//exon//intron       24284625//22575960//22608085 chr16:89217583-89217584(+) m6A CDS//exon//intron       24284625//24981863//27773535//22575960//22608085 chr16:89217603-89217604(+) m6A CDS//exon//intron       24284625//24981863//27773535//22575960//22608085 chr16:89217618-89217619(+) m6A CDS//exon//intron       24284625//24981863//27773535//22575960//22608085 chr16:89217628-89217629(+) m6A CDS//exon//intron       24284625//24981863//27773535//22575960//22608085 chr16:89217636-89217637(+) m6A CDS//exon//intron       24284625//24981863//27773535//22575960//22608085 chr16:89217640-89217641(+) m6A CDS//exon//intron       27773535 chr16:89217645-89217646(+) m6A CDS//exon//intron       24284625//24981863//27773535//22575960//22608085 chr16:89217669-89217670(+) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22575960//22608085 chr16:89217720-89217721(+) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22575960//22608085 chr16:89217741-89217742(+) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22575960//22608085 chr16:89217746-89217747(+) m6A 3'UTR//exon//intron       24284625//24981863//27773535//22575960//22608085 chr16:89217772-89217773(+) m6A exon//intron       24284625//27773535//22608085 chr16:89217787-89217788(+) m6A exon//intron       24284625//22608085 chr16:89217811-89217812(+) m6A exon//intron       24284625//22608085 chr16:89217834-89217835(+) m6A exon//intron       24284625//22608085 chr16:89217839-89217840(+) m6A exon//intron       24284625//22608085 chr16:89217855-89217856(+) m6A exon//intron       24284625//22608085 chr16:89217875-89217876(+) m6A exon//intron       24284625//22608085 chr16:89217891-89217892(+) m6A exon//intron       22608085 chr16:89219386-89219387(+) m6A exon//intron       24284625//25456834//22608085 chr16:89219452-89219453(+) m6A exon//intron       24284625//25456834//22608085 chr16:89219518-89219519(+) m6A exon//intron       24284625//24209618//25456834//22608085 chr16:89219539-89219540(+) m6A exon//intron       24284625//24209618//25456834//22608085 chr16:89219552-89219553(+) m6A exon//intron       24284625//24209618//25456834//22608085 chr16:89219564-89219565(+) m6A exon//intron       24284625//24209618//25456834//22608085 chr16:89219620-89219621(+) m6A exon//intron       25456834 chr16:89220049-89220050(+) m6A exon//intron       24284625 chr16:89220158-89220159(+) m6A exon//intron       24284625//25456834 chr16:89220559-89220560(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863 chr16:89220623-89220624(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr16:89220629-89220630(+) m6A 3'UTR//exon       24284625//25456834//24981863 chr16:89220675-89220676(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//22608085 chr16:89220695-89220696(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//22608085 chr16:89220711-89220712(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//22608085 chr16:89220717-89220718(+) m6A 3'UTR//exon       24284625//25456834//24981863//26404942//22608085 chr16:89220748-89220749(+) m6A 3'UTR//exon       24284625//24981863//26404942//22608085 chr16:89220813-89220814(+) m6A 3'UTR//exon       24284625//24981863 chr16:89220971-89220972(+) m6A 3'UTR//exon       24284625 chr16:89220977-89220978(+) m6A 3'UTR//exon       24284625 chr16:89220992-89220993(+) m6A 3'UTR//exon       24284625 chr16:89221315-89221316(+) m6A 3'UTR//exon       25456834//24981863 chr16:89221355-89221356(+) m6A 3'UTR//exon       24981863 chr16:89221385-89221386(+) m6A 3'UTR//exon       - chr16:89221443-89221444(+) m6A 3'UTR//exon       - chr16:89221481-89221482(+) m6A 3'UTR//exon       - chr16:89221587-89221588(+) m6A 3'UTR//exon       24209618//24981863 chr16:89221667-89221668(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr16:89221678-89221679(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr16:89221778-89221779(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr16:89221811-89221812(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr16:89221908-89221909(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr16:89221947-89221948(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr16:89221998-89221999(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr16:89222040-89222041(+) m6A 3'UTR//exon       24209618//25456834//24981863 chr16:89222063-89222064(+) m6A 3'UTR//exon       24209618//25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ACSF3	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Insoluble cytoplasm K562 cells     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-5p
Interactor2: ACSF3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg