Detail Information

Basic Information:


  VIRBase ID:  

VHID00195042

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:           COL23A1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H23-5p COL23A1
miRBase
Accession/Entrez ID		 MIMAT0014705 91522
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR COL23A1
chr5:177914413(-) A-I      intronic
chr5:177670232(-) A-I      intronic
chr5:177671016(-) A-I      intronic
chr5:177671028(-) A-I      intronic
chr5:177680522(-) A-I      intronic
chr5:177686006(-) A-I      intronic
chr5:177914412(-) A-I      intronic
chr5:177997303(-) A-I      intronic
chr5:177871579(-) A-I      intronic
chr5:177976645(-) A-I      intronic
chr5:177976625(-) A-I      intronic
chr5:177976614(-) A-I      intronic
chr5:177944701(-) A-I      intronic
chr5:177957456(-) A-I      intronic
chr5:177870731(-) A-I      intronic
chr5:177824906(-) A-I      intronic
chr5:177824912(-) A-I      intronic
chr5:177710138(-) A-I      intronic
chr5:177871604(-) A-I      intronic
chr5:177957459(-) A-I      intronic
chr5:177998828(-) A-I      intronic
chr5:178003378(-) A-I      intronic
chr5:177976632(-) A-I      intronic
chr5:177686168(-) A-I      intronic
chr5:177979615(-) A-I      intronic
chr5:177708937(-) A-I      intronic
chr5:177670238(-) A-I      intronic
chr5:177773431(-) A-I      intronic
chr5:177681102(-) A-I      intronic
chr5:177685663(-) A-I      intronic
chr5:177671053(-) A-I      intronic
chr5:178006522(-) A-I      intronic
chr5:177900055(-) A-I      intronic
chr5:177911006(-) A-I      intronic
chr5:177671056(-) A-I      intronic
chr5:177738829(-) A-I      intronic
chr5:177972079(-) A-I      intronic
chr5:177685731(-) A-I      intronic
chr5:177680659(-) A-I      intronic
chr5:178003308(-) A-I      intronic
chr5:177976694(-) A-I      intronic
chr5:177685764(-) A-I      intronic
chr5:177677834(-) A-I      intronic
chr5:177997168(-) A-I      intronic
chr5:177911011(-) A-I      intronic
chr5:177980114(-) A-I      intronic
chr5:177979606(-) A-I      intronic
chr5:177871745(-) A-I      intronic
chr5:177979982(-) A-I      intronic
chr5:177680580(-) A-I      intronic
chr5:177871037(-) A-I      intronic
chr5:177677795(-) A-I      intronic
chr5:177908087(-) A-I      intronic
chr5:177962125(-) A-I      intronic
chr5:177671218(-) A-I      intronic
chr5:177911044(-) A-I      intronic
chr5:177969130(-) A-I      intronic
chr5:177937442(-) A-I      intronic
chr5:177708931(-) A-I      intronic
chr5:177677928(-) A-I      intronic
chr5:177980138(-) A-I      intronic
chr5:177670069(-) A-I      intronic
chr5:177670079(-) A-I      intronic
chr5:177710124(-) A-I      intronic
chr5:177671096(-) A-I      intronic
chr5:177677899(-) A-I      intronic
chr5:177962153(-) A-I      intronic
chr5:177738828(-) A-I      intronic
chr5:177749363(-) A-I      intronic
chr5:177670083(-) A-I      intronic
chr5:177966464(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED COL23A1
chr5:177898388(-) T-C intron -    22484847
chr5:177976632(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase COL23A1
chr5:177664751-177664752(-) m6A 3'UTR       -
chr5:177664846-177664847(-) m6A 3'UTR       25456834//24981863
chr5:177664909-177664910(-) m6A 3'UTR       25456834//24981863//22608085
chr5:177664920-177664921(-) m6A 3'UTR       25456834//24981863//27773536//22608085
chr5:177664930-177664931(-) m6A 3'UTR       25456834//24981863//27773536//22608085
chr5:177664977-177664978(-) m6A 3'UTR       25456834//24981863//22608085
chr5:177665025-177665026(-) m6A 3'UTR       25456834//24981863
chr5:177665189-177665190(-) m6A 3'UTR       25456834//24981863
chr5:177665194-177665195(-) m6A 3'UTR       25456834//24981863
chr5:177665207-177665208(-) m6A 3'UTR       25456834//24981863
chr5:177665212-177665213(-) m6A 3'UTR       25456834//24981863
chr5:177665244-177665245(-) m6A 3'UTR       25456834//24981863//22608085
chr5:177665283-177665284(-) m6A 3'UTR       25456834//24981863//22608085
chr5:177665296-177665297(-) m6A 3'UTR       25456834//24981863//22608085
chr5:177665315-177665316(-) m6A 3'UTR       25456834//24981863//22608085
chr5:177665332-177665333(-) m6A 3'UTR       25456834//24981863//22608085
chr5:177665347-177665348(-) m6A 3'UTR       25456834//24981863//22608085
chr5:177665376-177665377(-) m6A 3'UTR       25456834//24981863//22608085
chr5:177665511-177665512(-) m6A 3'UTR       25456834
chr5:177665520-177665521(-) m6A 3'UTR       25456834
chr5:177665633-177665634(-) m6A 3'UTR       -
chr5:177665638-177665639(-) m6A 3'UTR       -
chr5:177665659-177665660(-) m6A 3'UTR       -
chr5:177669058-177669059(-) m6A CDS       25456834//24981863
chr5:177669072-177669073(-) m6A CDS       25456834//24981863
chr5:177669383-177669384(-) m6A CDS       25456834//24981863
chr5:177672948-177672949(-) m6A CDS       25456834//24981863
chr5:177672963-177672964(-) m6A CDS       25456834//24981863
chr5:177673268-177673269(-) m6A CDS       25456834//24981863
chr5:177676159-177676160(-) m6A CDS       27773536
chr5:177676184-177676185(-) m6A CDS       27773536
chr5:177676195-177676196(-) m6A CDS       27773536
chr5:177679586-177679587(-) m6A CDS       -
chr5:177681995-177681996(-) m6A CDS       -
chr5:177683872-177683873(-) m6A CDS       25456834//27773536
chr5:177684538-177684539(-) m6A CDS       25456834//27773536
chr5:177684555-177684556(-) m6A CDS       25456834//27773536
chr5:177688737-177688738(-) m6A CDS       27773536
chr5:177689232-177689233(-) m6A CDS       27773536
chr5:177690277-177690278(-) m6A CDS       27773536
chr5:177690313-177690314(-) m6A CDS       -
chr5:177690320-177690321(-) m6A CDS       -
chr5:177694320-177694321(-) m6A CDS       -
chr5:177695754-177695755(-) m6A CDS       -
chr5:177697361-177697362(-) m6A CDS       -
chr5:177988936-177988937(-) m6A exon//intron       -
chr5:178017294-178017295(-) m6A 5'UTR       27773536
chr5:178017391-178017392(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate COL23A1
Chromatin K562 cells     -
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H23-5p
Interactor2: COL23A1

Evidence Support:


Prediction-Evidence cRep//RNAHybrid
Support Database RepTar//VmiReg

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