Basic Information:

  VIRBase ID:  

VHID00194844

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:  MIMAT0014705          SNRNP25:  NM_024571     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-5p	SNRNP25
miRBase Accession/Entrez ID	MIMAT0014705	79622
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C16orf33

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SNRNP25	chr16:104402(+) A-I      intronic chr16:104525(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SNRNP25	chr16:103198-103199(+) m6A 5'UTR       24284625 chr16:103277-103278(+) m6A 5'UTR       24284625//25456834//24981863 chr16:103347-103348(+) m6A 5'UTR       24284625//25456834//24981863 chr16:103374-103375(+) m6A 5'UTR       25456834 chr16:103576-103577(+) m6A 5'UTR       24981863//27371828 chr16:103594-103595(+) m6A 5'UTR       24981863//27371828 chr16:103963-103964(+) m1A 5'UTR//exon       26863196//26863410 chr16:104029-104030(+) m6A CDS//exon       24284625//24209618//25456834 chr16:105471-105472(+) m1A CDS//exon       26863196 chr16:105809-105810(+) m6A CDS//exon       24284625//24981863//22575960 chr16:105832-105833(+) Y CDS//exon       26075521 chr16:105891-105892(+) m6A exon//intron       24284625//24981863//22575960 chr16:105965-105966(+) m6A exon//intron       24284625 chr16:106583-106584(+) m6A 3'UTR//CDS//exon       24209618//22575960 chr16:106594-106595(+) m6A 3'UTR//CDS//exon       24209618//22575960 chr16:107151-107152(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr16:107156-107157(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr16:107289-107290(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:107306-107307(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr16:107312-107313(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr16:107356-107357(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr16:107398-107399(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr16:107428-107429(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr16:107484-107485(+) m6A 3'UTR       24284625//24981863//22608085 chr16:107598-107599(+) m6A 3'UTR       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SNRNP25	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-5p
Interactor2: SNRNP25

Evidence Support:

Prediction-Evidence	miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg