Basic Information:

  VIRBase ID:  

VHID00194554

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:  MIMAT0014705          TSPEAR:  NM_001272037     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-5p	TSPEAR
miRBase Accession/Entrez ID	MIMAT0014705	54084
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C21orf29//DFNB98//ECTD14//TSP-EAR

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TSPEAR	chr21:45939143(-) A-I      intronic chr21:45939092(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	TSPEAR	chr21:46097512(-) A-I intron -    22327324

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TSPEAR	chr21:45918395-45918396(-) m6A 3'UTR       25456834 chr21:45918424-45918425(-) m6A 3'UTR       25456834 chr21:45918708-45918709(-) m6A 3'UTR       25456834 chr21:45918914-45918915(-) m6A 3'UTR       25456834 chr21:45918987-45918988(-) m6A 3'UTR       25456834 chr21:45919338-45919339(-) m6A 3'UTR       25456834 chr21:45919346-45919347(-) m6A 3'UTR       25456834 chr21:45919372-45919373(-) m6A 3'UTR       25456834 chr21:45919500-45919501(-) m6A 3'UTR       25456834 chr21:45941923-45941924(-) m6A CDS       24284625 chr21:45941955-45941956(-) m6A CDS       24284625 chr21:45945594-45945595(-) m6A CDS       24284625 chr21:45947254-45947255(-) m6A CDS       22608085 chr21:45947344-45947345(-) m6A CDS       22608085 chr21:45947364-45947365(-) m6A CDS       22608085 chr21:45947385-45947386(-) m6A CDS       22608085 chr21:45947390-45947391(-) m6A CDS       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TSPEAR	Chromatin K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-5p
Interactor2: TSPEAR

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg