Basic Information:

  VIRBase ID:  

VHID00194536

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:  MIMAT0014705          SCARA3:  NM_182826     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-5p	SCARA3
miRBase Accession/Entrez ID	MIMAT0014705	51435
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	APC7//CSR//CSR1//MSLR1//MSRL1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SCARA3	chr8:27525873(+) A-I      intronic chr8:27525872(+) A-I      intronic chr8:27523150(+) A-I      intronic chr8:27523125(+) A-I      intronic chr8:27533074(+) A-I      intronic chr8:27533092(+) A-I      intronic chr8:27533105(+) A-I      intronic chr8:27523098(+) A-I      intronic chr8:27523086(+) A-I      intronic chr8:27517306(+) A-I      intronic chr8:27525895(+) A-I      intronic chr8:27517282(+) A-I      intronic chr8:27517273(+) A-I      intronic chr8:27523134(+) A-I      intronic chr8:27532443(+) A-I      intronic chr8:27533106(+) A-I      intronic chr8:27493035(+) A-I      intronic chr8:27532326(+) A-I      intronic chr8:27517220(+) A-I      intronic chr8:27506105(+) A-I      intronic chr8:27506078(+) A-I      intronic chr8:27500130(+) A-I      intronic chr8:27532455(+) A-I      intronic chr8:27512200(+) A-I      intronic chr8:27517264(+) A-I      intronic chr8:27523162(+) A-I      intronic chr8:27500234(+) A-I      intronic chr8:27493225(+) A-I      intronic chr8:27526271(+) A-I      intronic chr8:27517354(+) A-I      intronic chr8:27533078(+) A-I      intronic chr8:27512138(+) A-I      intronic chr8:27533160(+) A-I      intronic chr8:27523109(+) A-I      intronic chr8:27523072(+) A-I      intronic chr8:27523078(+) A-I      intronic chr8:27533131(+) A-I      intronic chr8:27526121(+) A-I      intronic chr8:27533073(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SCARA3	chr8:27491420-27491421(+) m6A 5'UTR       24209618//24981863 chr8:27491531-27491532(+) m6A 5'UTR       24209618//24981863 chr8:27491714-27491715(+) m6A 5'UTR       24284625 chr8:27507266-27507267(+) m6A CDS       24284625 chr8:27507287-27507288(+) m6A CDS       24284625 chr8:27509060-27509061(+) m6A CDS       24284625 chr8:27514313-27514314(+) m6A CDS       24284625 chr8:27514328-27514329(+) m6A CDS       24284625 chr8:27516027-27516028(+) m6A CDS       24284625//25456834 chr8:27516079-27516080(+) m6A CDS       24284625//25456834//24981863 chr8:27516138-27516139(+) m6A CDS       24284625//25456834//24981863//22575960 chr8:27516143-27516144(+) m6A CDS       24284625//25456834//24981863//22575960 chr8:27516181-27516182(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr8:27516294-27516295(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr8:27516309-27516310(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr8:27516374-27516375(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr8:27516407-27516408(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:27516419-27516420(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:27516456-27516457(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:27516500-27516501(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:27516519-27516520(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:27516564-27516565(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:27516657-27516658(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:27516696-27516697(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:27516885-27516886(+) m6A CDS       24284625//24209618//24981863//26404942//22575960 chr8:27516918-27516919(+) m6A CDS       24284625//24209618//24981863//26404942//22575960 chr8:27516960-27516961(+) m6A CDS       24284625//24209618//24981863//26404942//22575960 chr8:27516975-27516976(+) m6A CDS       24284625//24209618//24981863//22575960 chr8:27517011-27517012(+) m6A CDS       24284625//24209618//24981863//22575960 chr8:27528435-27528436(+) m6A CDS//intron       24284625//24209618//24981863//22575960 chr8:27528500-27528501(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960 chr8:27528525-27528526(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr8:27528634-27528635(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:27528651-27528652(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:27528671-27528672(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:27528735-27528736(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:27528754-27528755(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr8:27528798-27528799(+) m6A CDS//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr8:27528951-27528952(+) m6A 3'UTR//intron       24284625//24209618//24981863 chr8:27529418-27529419(+) m6A 3'UTR//intron       24284625//24981863 chr8:27529548-27529549(+) m6A 3'UTR//intron       24284625//24981863//26404942 chr8:27529577-27529578(+) m6A 3'UTR//intron       24284625//24981863//26404942//22575960 chr8:27529595-27529596(+) m6A 3'UTR//intron       24284625//24981863//26404942//22575960 chr8:27529611-27529612(+) m6A 3'UTR//intron       24284625//24981863//26404942 chr8:27529631-27529632(+) m6A 3'UTR//intron       24284625//24981863//26404942 chr8:27529853-27529854(+) m6A 3'UTR//intron       24284625//24981863//26404942 chr8:27529879-27529880(+) m6A 3'UTR//intron       24284625//24981863//26404942 chr8:27530084-27530085(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960 chr8:27530127-27530128(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960 chr8:27530149-27530150(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960 chr8:27530296-27530297(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960 chr8:27530366-27530367(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SCARA3	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     - Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-5p
Interactor2: SCARA3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg