Basic Information:

  VIRBase ID:  

VHID00194349

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:  MIMAT0014705          SIN3B:  NM_001297595     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-5p	SIN3B
miRBase Accession/Entrez ID	MIMAT0014705	23309
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SIN3B	chr19:16944296(+) A-I      intronic chr19:16944282(+) A-I      intronic chr19:16967524(+) A-I      intronic chr19:16966708(+) A-I      intronic chr19:16966647(+) A-I      intronic chr19:16966628(+) A-I      intronic chr19:16966603(+) A-I      intronic chr19:16950040(+) A-I      intronic chr19:16944306(+) A-I      intronic chr19:16944293(+) A-I      intronic chr19:16975844(+) A-I      intronic chr19:16944292(+) A-I      intronic chr19:16975982(+) A-I      intronic chr19:16944291(+) A-I      intronic chr19:16944425(+) A-I      intronic chr19:16944339(+) A-I      intronic chr19:16944284(+) A-I      intronic chr19:16944283(+) A-I      intronic chr19:16944247(+) A-I      intronic chr19:16944222(+) A-I      intronic chr19:16943113(+) A-I      intronic chr19:16943112(+) A-I      intronic chr19:16943109(+) A-I      intronic chr19:16943102(+) A-I      intronic chr19:16943078(+) A-I      intronic chr19:16943073(+) A-I      intronic chr19:16967557(+) A-I      intronic chr19:16975918(+) A-I      intronic chr19:16972526(+) A-I      intronic chr19:16972514(+) A-I      intronic chr19:16972495(+) A-I      intronic chr19:16972480(+) A-I      intronic chr19:16972470(+) A-I      intronic chr19:16972435(+) A-I      intronic chr19:16972364(+) A-I      intronic chr19:16972324(+) A-I      intronic chr19:16972237(+) A-I      intronic chr19:16972188(+) A-I      intronic chr19:16969894(+) A-I      intronic chr19:16969646(+) A-I      intronic chr19:16969618(+) A-I      intronic chr19:16968781(+) A-I      intronic chr19:16968768(+) A-I      intronic chr19:16967652(+) A-I      intronic chr19:16967621(+) A-I      intronic chr19:16943083(+) A-I      intronic chr19:16967612(+) A-I      intronic chr19:16967500(+) A-I      intronic chr19:16967469(+) A-I      intronic chr19:16967462(+) A-I      intronic chr19:16966737(+) A-I      intronic chr19:16966715(+) A-I      intronic chr19:16966714(+) A-I      intronic chr19:16966657(+) A-I      intronic chr19:16966589(+) A-I      intronic chr19:16960674(+) A-I      intronic chr19:16954764(+) A-I      intronic chr19:16950797(+) A-I      intronic chr19:16950756(+) A-I      intronic chr19:16950632(+) A-I      intronic chr19:16949682(+) A-I      intronic chr19:16949665(+) A-I      intronic chr19:16949586(+) A-I      intronic chr19:16944738(+) A-I      intronic chr19:16944634(+) A-I      intronic chr19:16944554(+) A-I      intronic chr19:16950560(+) A-I      intronic chr19:16950748(+) A-I      intronic chr19:16950652(+) A-I      intronic chr19:16956755(+) A-I      intronic chr19:16950623(+) A-I      intronic chr19:16944195(+) A-I      intronic chr19:16950032(+) A-I      intronic chr19:16943523(+) A-I      intronic chr19:16966664(+) A-I      intronic chr19:16949999(+) A-I      intronic chr19:16944241(+) A-I      intronic chr19:16950031(+) A-I      intronic chr19:16975916(+) A-I      intronic chr19:16950760(+) A-I      intronic chr19:16966691(+) A-I      intronic chr19:16950736(+) A-I      intronic chr19:16945868(+) A-I      intronic chr19:16969640(+) A-I      intronic chr19:16949759(+) A-I      intronic chr19:16963354(+) A-I      intronic chr19:16966710(+) A-I      intronic chr19:16950593(+) A-I      intronic chr19:16944300(+) A-I      intronic chr19:16950657(+) A-I      intronic chr19:16966605(+) A-I      intronic chr19:16972312(+) A-I      intronic chr19:16967457(+) A-I      intronic chr19:16972236(+) A-I      intronic chr19:16944228(+) A-I      intronic chr19:16949576(+) A-I      intronic chr19:16944810(+) A-I      intronic chr19:16960688(+) A-I      intronic chr19:16944227(+) A-I      intronic chr19:16950650(+) A-I      intronic chr19:16943503(+) A-I      intronic chr19:16949699(+) A-I      intronic chr19:16972690(+) A-I      intronic chr19:16949862(+) A-I      intronic chr19:16950053(+) A-I      intronic chr19:16981626(+) A-I      intronic chr19:16949563(+) A-I      intronic chr19:16950747(+) A-I      intronic chr19:16949674(+) A-I      intronic chr19:16966739(+) A-I      intronic chr19:16944652(+) A-I      intronic chr19:16960620(+) A-I      intronic chr19:16944664(+) A-I      intronic chr19:16966718(+) A-I      intronic chr19:16966661(+) A-I      intronic chr19:16943473(+) A-I      intronic chr19:16944189(+) A-I      intronic chr19:16949560(+) A-I      intronic chr19:16967482(+) A-I      intronic chr19:16967563(+) A-I      intronic chr19:16949648(+) A-I      intronic chr19:16971781(+) A-I      intronic chr19:16949757(+) A-I      intronic chr19:16974928(+) A-I      intronic chr19:16944599(+) A-I      intronic chr19:16967617(+) A-I      intronic chr19:16944314(+) A-I      intronic chr19:16950735(+) A-I      intronic chr19:16945802(+) A-I      intronic chr19:16949552(+) A-I      intronic chr19:16950681(+) A-I      intronic chr19:16967463(+) A-I      intronic chr19:16950047(+) A-I      intronic chr19:16969415(+) A-I      intronic chr19:16944332(+) A-I      intronic chr19:16975377(+) A-I      intronic chr19:16944430(+) A-I      intronic chr19:16967512(+) A-I      intronic chr19:16950772(+) A-I      intronic chr19:16950585(+) A-I      intronic chr19:16967522(+) A-I      intronic chr19:16944267(+) A-I      intronic chr19:16950576(+) A-I      intronic chr19:16950577(+) A-I      intronic chr19:16969506(+) A-I      intronic chr19:16944281(+) A-I      intronic chr19:16950810(+) A-I      intronic chr19:16966823(+) A-I      intronic chr19:16943589(+) A-I      intronic chr19:16972564(+) A-I      intronic chr19:16960692(+) A-I      intronic chr19:16950666(+) A-I      intronic chr19:16949625(+) A-I      intronic chr19:16967535(+) A-I      intronic chr19:16950730(+) A-I      intronic chr19:16969614(+) A-I      intronic chr19:16972413(+) A-I      intronic chr19:16950799(+) A-I      intronic chr19:16943174(+) A-I      intronic chr19:16950014(+) A-I      intronic chr19:16975763(+) A-I      intronic chr19:16944798(+) A-I      intronic chr19:16966712(+) A-I      intronic chr19:16967476(+) A-I      intronic chr19:16966612(+) A-I      intronic chr19:16944233(+) A-I      intronic chr19:16949624(+) A-I      intronic chr19:16969596(+) A-I      intronic chr19:16972519(+) A-I      intronic chr19:16944173(+) A-I      intronic chr19:16967566(+) A-I      intronic chr19:16972515(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SIN3B	chr19:16966487(+) A-I intron -    21960545   //22327324 chr19:16966739(+) A-I intron -    21960545   //22327324 chr19:16966484(+) A-I intron -    21960545 chr19:16966612(+) A-I intron -    21960545 chr19:16966618(+) A-I intron -    21960545 chr19:16966661(+) A-I intron -    21960545 chr19:16967512(+) A-I intron -    21960545 chr19:16967618(+) A-I intron -    21960545 chr19:16967635(+) A-I intron -    21960545 chr19:16982627(+) C-T intron -    22484847 chr19:16944228(+) A-G intron -    22484847 chr19:16944664(+) A-G intron -    22484847 chr19:16966484(+) A-G intron -    22484847 chr19:16966487(+) A-G intron -    22484847 chr19:16966605(+) A-G intron -    22484847 chr19:16966618(+) A-G intron -    22484847 chr19:16966717(+) A-G intron -    22484847 chr19:16966739(+) A-G intron -    22484847 chr19:16967463(+) A-G intron -    22484847 chr19:16967476(+) A-G intron -    22484847 chr19:16967512(+) A-G intron -    22484847 chr19:16967522(+) A-G intron -    22484847 chr19:16967548(+) A-G intron -    22484847 chr19:16967563(+) A-G intron -    22484847 chr19:16967566(+) A-G intron -    22484847 chr19:16967592(+) A-G intron -    22484847 chr19:16967618(+) A-G intron -    22484847 chr19:16967635(+) A-G intron -    22484847 chr19:16972690(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SIN3B	chr19:16942432-16942433(+) m6A CDS       - chr19:16952612-16952613(+) m6A CDS       24981863 chr19:16952642-16952643(+) m6A CDS       24981863 chr19:16952716-16952717(+) m6A CDS       - chr19:16952729-16952730(+) m6A CDS       - chr19:16957793-16957794(+) m6A CDS       - chr19:16957874-16957875(+) m6A CDS       - chr19:16957893-16957894(+) m6A CDS       - chr19:16962279-16962280(+) m6A CDS       - chr19:16974230-16974231(+) m6A 5'UTR//intron       24981863 chr19:16974239-16974240(+) m6A 5'UTR//intron       24981863 chr19:16974282-16974283(+) m6A 5'UTR//intron       24981863 chr19:16980340-16980341(+) m6A CDS//exon       24284625 chr19:16980415-16980416(+) m6A CDS//exon       24284625//24209618//25456834 chr19:16980481-16980482(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr19:16980514-16980515(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr19:16980520-16980521(+) m6A CDS       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr19:16980537-16980538(+) m6A CDS       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr19:16980544-16980545(+) m6A CDS       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr19:16980561-16980562(+) m1A CDS       26863196 chr19:16980575-16980576(+) m6A CDS       24284625//24209618//25456834//24981863//27371828//22575960//22608085 chr19:16980735-16980736(+) m6A CDS//exon       24284625//25456834//24981863//22608085 chr19:16980798-16980799(+) m6A CDS//exon       24284625//25456834//24981863 chr19:16982078-16982079(+) m6A CDS//exon       24284625//25456834//24981863 chr19:16982129-16982130(+) m6A CDS//exon       24284625 chr19:16982180-16982181(+) m6A CDS//exon       24284625 chr19:16982195-16982196(+) m6A CDS//exon       24284625 chr19:16986950-16986951(+) m6A CDS//exon       24284625 chr19:16986985-16986986(+) m6A CDS//exon       24284625 chr19:16987028-16987029(+) m6A CDS//exon       24284625 chr19:16987348-16987349(+) m6A CDS//exon       24284625 chr19:16987372-16987373(+) m6A CDS//exon       24284625 chr19:16989106-16989107(+) m6A CDS//exon       - chr19:16989151-16989152(+) m6A CDS//exon       24284625//24209618//22575960//22608085 chr19:16989160-16989161(+) m6A CDS//exon       24284625//24209618//22575960//22608085 chr19:16989180-16989181(+) m6A CDS//exon       24284625//24209618//25456834//22575960//22608085 chr19:16989374-16989375(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:16989410-16989411(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:16989437-16989438(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:16989466-16989467(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr19:16989659-16989660(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960//22608085 chr19:16989727-16989728(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960 chr19:16989799-16989800(+) m6A 3'UTR//exon       24284625//25456834//24981863//22575960 chr19:16989951-16989952(+) m6A 3'UTR       24284625//24981863 chr19:16990033-16990034(+) m6A 3'UTR       24284625//24981863 chr19:16990108-16990109(+) m6A 3'UTR       24284625//24981863 chr19:16990121-16990122(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr19:16990179-16990180(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr19:16990196-16990197(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr19:16990223-16990224(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr19:16990246-16990247(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr19:16990439-16990440(+) m6A 3'UTR       24284625//24209618 chr19:16990506-16990507(+) m6A 3'UTR       24284625//24209618//25456834//24981863 chr19:16990622-16990623(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr19:16990729-16990730(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr19:16990778-16990779(+) m6A 3'UTR       24284625//24209618//25456834 chr19:16990911-16990912(+) m6A 3'UTR       24284625 chr19:16990987-16990988(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SIN3B	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-5p
Interactor2: SIN3B

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg