Basic Information:

  VIRBase ID:  

VHID00194254

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:  MIMAT0014705          RER1:  NM_007033     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-5p	RER1
miRBase Accession/Entrez ID	MIMAT0014705	11079
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RER1	chr1:2323367-2323368(+) m6A 5'UTR//exon       24981863//22575960 chr1:2325747-2325748(+) m6A 5'UTR//intron       - chr1:2326477-2326478(+) m6A 5'UTR//intron       - chr1:2326484-2326485(+) m6A 5'UTR//intron       - chr1:2326507-2326508(+) m6A 5'UTR//intron       - chr1:2326567-2326568(+) m6A 5'UTR//intron       - chr1:2326737-2326738(+) m6A 5'UTR//intron       - chr1:2326753-2326754(+) m6A 5'UTR//intron       - chr1:2326778-2326779(+) m6A 5'UTR//intron       - chr1:2326785-2326786(+) m6A 5'UTR//intron       - chr1:2326792-2326793(+) m6A 5'UTR//intron       - chr1:2326808-2326809(+) m6A 5'UTR//intron       - chr1:2326829-2326830(+) m6A 5'UTR//intron       - chr1:2326870-2326871(+) m6A 5'UTR//intron       - chr1:2334570-2334571(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//27773535//22575960//22608085 chr1:2334597-2334598(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:2334725-2334726(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:2334737-2334738(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:2335012-2335013(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr1:2335124-2335125(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr1:2335450-2335451(+) m6A 3'UTR       27773535 chr1:2335466-2335467(+) m6A 3'UTR       27773535 chr1:2335527-2335528(+) m6A 3'UTR       27773535 chr1:2335553-2335554(+) m6A 3'UTR       27773535 chr1:2335792-2335793(+) m6A 3'UTR       24981863 chr1:2335809-2335810(+) m6A 3'UTR       24981863 chr1:2335816-2335817(+) m6A 3'UTR       24981863 chr1:2335920-2335921(+) m6A 3'UTR       24284625//24981863 chr1:2336100-2336101(+) m6A 3'UTR       25456834//27773536//22608085 chr1:2336108-2336109(+) m6A 3'UTR       25456834//27773536//22608085 chr1:2336295-2336296(+) m6A 3'UTR       24981863//27773535 chr1:2336328-2336329(+) m6A 3'UTR       24981863//27773535 chr1:2336336-2336337(+) m6A 3'UTR       24981863//27773535 chr1:2336384-2336385(+) m6A 3'UTR       24284625//24981863//27773535 chr1:2336476-2336477(+) m6A 3'UTR       24284625//27773535 chr1:2336510-2336511(+) m6A 3'UTR       24284625//27773535 chr1:2336557-2336558(+) m6A 3'UTR       24284625//27773535//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RER1	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-5p
Interactor2: RER1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg