Basic Information:

  VIRBase ID:  

VHID00194071

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:  MIMAT0014705          KCNQ4:  NM_172163     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-5p	KCNQ4
miRBase Accession/Entrez ID	MIMAT0014705	9132
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DFNA2//DFNA2A//KV7.4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	KCNQ4	chr1:41298885(+) A-I      intronic chr1:41273761(+) A-I      intronic chr1:41298993(+) A-I      intronic chr1:41298895(+) A-I      intronic chr1:41279909(+) A-I      intronic chr1:41275616(+) A-I      intronic chr1:41275617(+) A-I      intronic chr1:41280137(+) A-I      intronic chr1:41302860(+) A-I      intronic chr1:41258865(+) A-I      intronic chr1:41297541(+) A-I      intronic chr1:41252969(+) A-I      intronic chr1:41300186(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	KCNQ4	chr1:41304124-41304125(+) m6A CDS//exon       25456834//24981863//22575960//22608085 chr1:41304133-41304134(+) m6A CDS//exon       25456834//24981863//22575960//22608085 chr1:41304190-41304191(+) m6A CDS//exon       25456834//24981863//22575960//22608085 chr1:41304198-41304199(+) m6A 3'UTR//exon       25456834//24981863//22575960//22608085 chr1:41304270-41304271(+) m6A 3'UTR//exon       25456834//24981863//22608085 chr1:41304287-41304288(+) m6A 3'UTR//exon       25456834//24981863//22608085 chr1:41304311-41304312(+) m6A 3'UTR//exon       25456834//24981863 chr1:41304591-41304592(+) m6A 3'UTR//exon       25456834 chr1:41304676-41304677(+) m6A 3'UTR//exon       25456834 chr1:41305712-41305713(+) m6A 3'UTR//exon       25456834 chr1:41305735-41305736(+) m6A 3'UTR//exon       25456834 chr1:41305776-41305777(+) m6A 3'UTR//exon       25456834 chr1:41305804-41305805(+) m6A 3'UTR//exon       25456834 chr1:41305950-41305951(+) m6A 3'UTR//exon       25456834 chr1:41305999-41306000(+) m6A 3'UTR//exon       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	KCNQ4	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-5p
Interactor2: KCNQ4

Evidence Support:

Prediction-Evidence	miRanda//PITA//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg