Basic Information:

  VIRBase ID:  

VHID00193918

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:  MIMAT0014705          ITSN1:  NM_001331011     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-5p	ITSN1
miRBase Accession/Entrez ID	MIMAT0014705	6453
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ITSN//SH3D1A//SH3P17

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ITSN1	chr21:35030067(+) A-I      intronic chr21:35059644(+) A-I      intronic chr21:35128443(+) A-I      intronic chr21:35030231(+) A-I      intronic chr21:35032253(+) A-I      intronic chr21:35059631(+) A-I      intronic chr21:35167632(+) A-I      intronic chr21:35128484(+) A-I      intronic chr21:35168409(+) A-I      intronic chr21:35032249(+) A-I      intronic chr21:35097641(+) A-I      intronic chr21:35047677(+) A-I      intronic chr21:35128445(+) A-I      intronic chr21:35071839(+) A-I      intronic chr21:35071893(+) A-I      intronic chr21:35085606(+) A-I      intronic chr21:35168397(+) A-I      intronic chr21:35168407(+) A-I      intronic chr21:35128485(+) A-I      intronic chr21:35059637(+) A-I      intronic chr21:35059615(+) A-I      intronic chr21:35022061(+) A-I      intronic chr21:35032277(+) A-I      intronic chr21:35032267(+) A-I      intronic chr21:35045118(+) A-I      intronic chr21:35026470(+) A-I      intronic chr21:35029120(+) A-I      intronic chr21:35029121(+) A-I      intronic chr21:35029156(+) A-I      intronic chr21:35029210(+) A-I      intronic chr21:35029245(+) A-I      intronic chr21:35029279(+) A-I      intronic chr21:35029289(+) A-I      intronic chr21:35029301(+) A-I      intronic chr21:35030171(+) A-I      intronic chr21:35030181(+) A-I      intronic chr21:35030184(+) A-I      intronic chr21:35030198(+) A-I      intronic chr21:35026456(+) A-I      intronic chr21:35026465(+) A-I      intronic chr21:35234352(+) A-I      intronic chr21:35180344(+) A-I      intronic chr21:35180332(+) A-I      intronic chr21:35179863(+) A-I      intronic chr21:35179768(+) A-I      intronic chr21:35179759(+) A-I      intronic chr21:35179742(+) A-I      intronic chr21:35075243(+) A-I      intronic chr21:35075302(+) A-I      intronic chr21:35075341(+) A-I      intronic chr21:35077169(+) A-I      intronic chr21:35077273(+) A-I      intronic chr21:35077295(+) A-I      intronic chr21:35077305(+) A-I      intronic chr21:35049831(+) A-I      intronic chr21:35032191(+) A-I      intronic chr21:35032235(+) A-I      intronic chr21:35032243(+) A-I      intronic chr21:35038374(+) A-I      intronic chr21:35043993(+) A-I      intronic chr21:35044039(+) A-I      intronic chr21:35044469(+) A-I      intronic chr21:35045283(+) A-I      intronic chr21:35047614(+) A-I      intronic chr21:35077312(+) A-I      intronic chr21:35077344(+) A-I      intronic chr21:35089935(+) A-I      intronic chr21:35179741(+) A-I      intronic chr21:35168448(+) A-I      intronic chr21:35168423(+) A-I      intronic chr21:35137622(+) A-I      intronic chr21:35132258(+) A-I      intronic chr21:35132257(+) A-I      intronic chr21:35130423(+) A-I      intronic chr21:35128458(+) A-I      intronic chr21:35128446(+) A-I      intronic chr21:35128440(+) A-I      intronic chr21:35121840(+) A-I      intronic chr21:35047726(+) A-I      intronic chr21:35047775(+) A-I      intronic chr21:35049763(+) A-I      intronic chr21:35049826(+) A-I      intronic chr21:35072197(+) A-I      intronic chr21:35053767(+) A-I      intronic chr21:35053776(+) A-I      intronic chr21:35053779(+) A-I      intronic chr21:35053786(+) A-I      intronic chr21:35059623(+) A-I      intronic chr21:35059652(+) A-I      intronic chr21:35059682(+) A-I      intronic chr21:35059691(+) A-I      intronic chr21:35061221(+) A-I      intronic chr21:35061228(+) A-I      intronic chr21:35061232(+) A-I      intronic chr21:35062407(+) A-I      intronic chr21:35062412(+) A-I      intronic chr21:35062413(+) A-I      intronic chr21:35062570(+) A-I      intronic chr21:35062676(+) A-I      intronic chr21:35062726(+) A-I      intronic chr21:35062727(+) A-I      intronic chr21:35062784(+) A-I      intronic chr21:35065174(+) A-I      intronic chr21:35065193(+) A-I      intronic chr21:35066375(+) A-I      intronic chr21:35066377(+) A-I      intronic chr21:35066380(+) A-I      intronic chr21:35067199(+) A-I      intronic chr21:35067244(+) A-I      intronic chr21:35067318(+) A-I      intronic chr21:35067321(+) A-I      intronic chr21:35067354(+) A-I      intronic chr21:35071815(+) A-I      intronic chr21:35071823(+) A-I      intronic chr21:35071829(+) A-I      intronic chr21:35071838(+) A-I      intronic chr21:35071897(+) A-I      intronic chr21:35071913(+) A-I      intronic chr21:35071970(+) A-I      intronic chr21:35071984(+) A-I      intronic chr21:35072164(+) A-I      intronic chr21:35108252(+) A-I      intronic chr21:35073316(+) A-I      intronic chr21:35073551(+) A-I      intronic chr21:35073948(+) A-I      intronic chr21:35121832(+) A-I      intronic chr21:35121794(+) A-I      intronic chr21:35121789(+) A-I      intronic chr21:35121787(+) A-I      intronic chr21:35121786(+) A-I      intronic chr21:35180370(+) A-I      intronic chr21:35121698(+) A-I      intronic chr21:35089941(+) A-I      intronic chr21:35090079(+) A-I      intronic chr21:35093979(+) A-I      intronic chr21:35093980(+) A-I      intronic chr21:35093989(+) A-I      intronic chr21:35094329(+) A-I      intronic chr21:35094351(+) A-I      intronic chr21:35097758(+) A-I      intronic chr21:35097784(+) A-I      intronic chr21:35097825(+) A-I      intronic chr21:35098840(+) A-I      intronic chr21:35098974(+) A-I      intronic chr21:35108188(+) A-I      intronic chr21:35108189(+) A-I      intronic chr21:35108250(+) A-I      intronic chr21:35108251(+) A-I      intronic chr21:35109042(+) A-I      intronic chr21:35109081(+) A-I      intronic chr21:35109187(+) A-I      intronic chr21:35109274(+) A-I      intronic chr21:35109902(+) A-I      intronic chr21:35110232(+) A-I      intronic chr21:35110395(+) A-I      intronic chr21:35110408(+) A-I      intronic chr21:35110413(+) A-I      intronic chr21:35110846(+) A-I      intronic chr21:35110848(+) A-I      intronic chr21:35111148(+) A-I      intronic chr21:35111193(+) A-I      intronic chr21:35111285(+) A-I      intronic chr21:35121530(+) A-I      intronic chr21:35121529(+) A-I      intronic chr21:35121427(+) A-I      intronic chr21:35121394(+) A-I      intronic chr21:35121125(+) A-I      intronic chr21:35121104(+) A-I      intronic chr21:35121103(+) A-I      intronic chr21:35121009(+) A-I      intronic chr21:35120693(+) A-I      intronic chr21:35118970(+) A-I      intronic chr21:35118969(+) A-I      intronic chr21:35115703(+) A-I      intronic chr21:35115691(+) A-I      intronic chr21:35114634(+) A-I      intronic chr21:35114622(+) A-I      intronic chr21:35114545(+) A-I      intronic chr21:35113155(+) A-I      intronic chr21:35113137(+) A-I      intronic chr21:35113136(+) A-I      intronic chr21:35111361(+) A-I      intronic chr21:35111335(+) A-I      intronic chr21:35247140(+) A-I      intronic chr21:35252167(+) A-I      intronic chr21:35252193(+) A-I      intronic chr21:35111339(+) A-I      intronic chr21:35017390(+) A-I      intronic chr21:35017404(+) A-I      intronic chr21:35017693(+) A-I      intronic chr21:35017694(+) A-I      intronic chr21:35017699(+) A-I      intronic chr21:35017844(+) A-I      intronic chr21:35019169(+) A-I      intronic chr21:35019171(+) A-I      intronic chr21:35020030(+) A-I      intronic chr21:35020918(+) A-I      intronic chr21:35021074(+) A-I      intronic chr21:35026385(+) A-I      intronic chr21:35043758(+) A-I      intronic chr21:35043969(+) A-I      intronic chr21:35044326(+) A-I      intronic chr21:35043962(+) A-I      intronic chr21:35044367(+) A-I      intronic chr21:35045259(+) A-I      intronic chr21:35043650(+) A-I      intronic chr21:35044350(+) A-I      intronic chr21:35043722(+) A-I      intronic chr21:35042586(+) A-I      intronic chr21:35043979(+) A-I      intronic chr21:35044349(+) A-I      intronic chr21:35017192(+) A-I      intronic chr21:35044455(+) A-I      intronic chr21:35043800(+) A-I      intronic chr21:35043949(+) A-I      intronic chr21:35043988(+) A-I      intronic chr21:35043772(+) A-I      intronic chr21:35043617(+) A-I      intronic chr21:35045207(+) A-I      intronic chr21:35043634(+) A-I      intronic chr21:35043759(+) A-I      intronic chr21:35043951(+) A-I      intronic chr21:35043732(+) A-I      intronic chr21:35072618(+) A-I      intronic chr21:35044365(+) A-I      intronic chr21:35043710(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ITSN1	chr21:35038951(+) A-I intron -    15342557 chr21:35040430(+) A-I intron -    15342557 chr21:35042514(+) A-I intron -    15342557 chr21:35042586(+) A-I intron -    15342557 chr21:35043634(+) A-I intron -    15342557 chr21:35043650(+) A-I intron -    15342557 chr21:35043722(+) A-I intron -    15342557 chr21:35043732(+) A-I intron -    15342557 chr21:35043758(+) A-I intron -    15342557 chr21:35043759(+) A-I intron -    15342557 chr21:35043772(+) A-I intron -    15342557 chr21:35043800(+) A-I intron -    15342557 chr21:35043949(+) A-I intron -    15342557 chr21:35043951(+) A-I intron -    15342557 chr21:35043962(+) A-I intron -    15342557 chr21:35043969(+) A-I intron -    15342557 chr21:35043979(+) A-I intron -    15342557 chr21:35043987(+) A-I intron -    15342557 chr21:35043988(+) A-I intron -    15342557 chr21:35043997(+) A-I intron -    15342557 chr21:35044326(+) A-I intron -    15342557 chr21:35044349(+) A-I intron -    15342557 chr21:35044350(+) A-I intron -    15342557 chr21:35044365(+) A-I intron -    15342557 chr21:35044367(+) A-I intron -    15342557 chr21:35044390(+) A-I intron -    15342557 chr21:35044455(+) A-I intron -    15342557 chr21:35044470(+) A-I intron -    15342557 chr21:35045207(+) A-I intron -    15342557 chr21:35045259(+) A-I intron -    15342557

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ITSN1	chr21:35014903-35014904(+) m6A 5'UTR//exon       24284625//25456834//24981863//22608085 chr21:35015002-35015003(+) m6A 5'UTR//exon       24981863 chr21:35140085-35140086(+) m6A CDS//exon       24981863//27773535 chr21:35140103-35140104(+) m6A CDS//exon       24981863//27773535 chr21:35144391-35144392(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535 chr21:35144413-35144414(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535 chr21:35144443-35144444(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960 chr21:35144536-35144537(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr21:35144545-35144546(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr21:35146948-35146949(+) m6A exon//intron       24981863 chr21:35146976-35146977(+) m6A exon//intron       24209618//25456834//24981863 chr21:35146994-35146995(+) m6A exon//intron       24209618//25456834//24981863 chr21:35147046-35147047(+) m6A 3'UTR//CDS//exon       24209618//25456834//24981863//22608085 chr21:35147094-35147095(+) m6A 3'UTR//CDS//exon       24209618//24981863//27773535//22608085 chr21:35147111-35147112(+) m6A 3'UTR//CDS//exon       24209618//24981863//27773535//22608085 chr21:35147118-35147119(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085 chr21:35147126-35147127(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085 chr21:35147155-35147156(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085 chr21:35147300-35147301(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085 chr21:35147356-35147357(+) m6A 3'UTR//CDS//exon       24981863//27773535//22608085 chr21:35153787-35153788(+) m6A 3'UTR//CDS       24981863//27773535//22608085 chr21:35153802-35153803(+) m6A 3'UTR//CDS       24981863//22608085 chr21:35153826-35153827(+) m6A 3'UTR//CDS       24981863//22608085 chr21:35153840-35153841(+) m6A 3'UTR//CDS       24981863//22608085 chr21:35154340-35154341(+) m6A 3'UTR//CDS       24981863//27773535//22608085 chr21:35154363-35154364(+) m6A 3'UTR//CDS       24981863//27773535//22608085 chr21:35154389-35154390(+) m6A 3'UTR//CDS       24981863//27773535//22608085 chr21:35154400-35154401(+) m6A 3'UTR//CDS       24981863//27773535//22608085 chr21:35166646-35166647(+) m6A 3'UTR//CDS       24981863//27773535//22608085 chr21:35166712-35166713(+) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085 chr21:35166721-35166722(+) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//22608085 chr21:35166751-35166752(+) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//22608085 chr21:35166762-35166763(+) m1A 3'UTR//CDS       26863196 chr21:35169699-35169700(+) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//22608085 chr21:35169745-35169746(+) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//22608085 chr21:35169754-35169755(+) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//22608085 chr21:35169772-35169773(+) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//22608085 chr21:35169823-35169824(+) m6A 3'UTR//CDS       25456834//24981863//27773535//22608085 chr21:35169837-35169838(+) m6A 3'UTR//CDS       25456834//24981863//27773535//22608085 chr21:35169871-35169872(+) m6A 3'UTR//CDS       25456834//24981863 chr21:35183335-35183336(+) m6A 3'UTR//CDS       - chr21:35183354-35183355(+) m6A 3'UTR//CDS       - chr21:35183400-35183401(+) m6A 3'UTR//CDS       24284625 chr21:35183436-35183437(+) m6A 3'UTR//CDS       24284625 chr21:35183452-35183453(+) m6A 3'UTR//CDS       24284625 chr21:35186240-35186241(+) m6A 3'UTR//CDS//exon       24284625 chr21:35187432-35187433(+) Gm intron       - chr21:35202017-35202018(+) m6A 3'UTR//CDS//exon//intron       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ITSN1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-5p
Interactor2: ITSN1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg