Basic Information:

  VIRBase ID:  

VHID00193892

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:  MIMAT0014705          RFNG:  NM_002917     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-5p	RFNG
miRBase Accession/Entrez ID	MIMAT0014705	5986
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RFNG	chr17:80005851-80005852(-) m6A 3'UTR//exon       24284625//27773535 chr17:80005892-80005893(-) m6A 3'UTR//exon       24284625//27773535 chr17:80005935-80005936(-) m6A 3'UTR//exon       24284625//24981863//27773535 chr17:80005982-80005983(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535 chr17:80006022-80006023(-) m6A 3'UTR//exon       24284625//25456834//24981863//27773535 chr17:80006103-80006104(-) m6A 3'UTR//exon       25456834//24981863 chr17:80006328-80006329(-) m6A 3'UTR//exon       27773536 chr17:80006398-80006399(-) m6A 3'UTR//exon       27773536 chr17:80006475-80006476(-) m6A 3'UTR//exon       27773536 chr17:80006550-80006551(-) m6A 3'UTR//exon       - chr17:80006625-80006626(-) m6A CDS//exon       27773535 chr17:80006644-80006645(-) m6A CDS//exon       27773535 chr17:80006650-80006651(-) m6A CDS//exon       27773535 chr17:80007748-80007749(-) m6A exon//intron       - chr17:80008279-80008280(-) m6A CDS//exon       27371828//27773536 chr17:80008320-80008321(-) m6A CDS//exon       27371828//27773536 chr17:80008447-80008448(-) m6A exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RFNG	Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-5p
Interactor2: RFNG

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg