Basic Information:

  VIRBase ID:  

VHID00193845

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:  MIMAT0014705          PLXNB1:  NM_001130082     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H23-5p	PLXNB1
miRBase Accession/Entrez ID	MIMAT0014705	5364
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PLEXIN-B1//PLXN5//SEP

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PLXNB1	chr3:48449582(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PLXNB1	chr3:48445401-48445402(-) m6A 3'UTR//exon       24284625//24981863//27773535//27371828 chr3:48445565-48445566(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr3:48445581-48445582(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr3:48445600-48445601(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr3:48445631-48445632(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr3:48445718-48445719(-) m6A 3'UTR//exon       24284625//25456834//24981863//27371828//22575960 chr3:48445889-48445890(-) m6A 3'UTR//exon       24284625 chr3:48445911-48445912(-) m6A CDS//exon       24284625 chr3:48447163-48447164(-) m6A CDS//exon       27773535 chr3:48447191-48447192(-) m6A CDS//exon       27773535 chr3:48447203-48447204(-) m6A CDS//exon       27773535 chr3:48452335-48452336(-) m6A CDS//exon       24284625 chr3:48452374-48452375(-) m6A CDS//exon       24284625 chr3:48454241-48454242(-) m6A CDS//exon       24284625 chr3:48456313-48456314(-) m6A 3'UTR//CDS//exon       27773535 chr3:48456373-48456374(-) m6A 3'UTR//CDS//exon       27773535 chr3:48458908-48458909(-) Tm intron       - chr3:48459721-48459722(-) m6A 3'UTR//CDS//exon       27773535 chr3:48459738-48459739(-) m6A 3'UTR//CDS//exon       27773535 chr3:48459746-48459747(-) m6A 3'UTR//CDS//exon       27773535 chr3:48459877-48459878(-) m6A 3'UTR//CDS//exon       27773535 chr3:48461175-48461176(-) m6A CDS//intron       27371828 chr3:48461244-48461245(-) m6A CDS//intron       24284625//25456834//27773535//27371828 chr3:48461283-48461284(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828 chr3:48461337-48461338(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828 chr3:48461357-48461358(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828 chr3:48461386-48461387(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828 chr3:48461393-48461394(-) m6A CDS//intron       24284625//25456834//24981863//27773535 chr3:48461526-48461527(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535 chr3:48461627-48461628(-) m6A CDS//exon//intron       27773535 chr3:48461646-48461647(-) m6A CDS//exon//intron       27773535 chr3:48465256-48465257(-) m6A CDS//intron       24981863 chr3:48465313-48465314(-) m6A CDS//intron       24284625//24981863 chr3:48465604-48465605(-) m6A CDS//intron       25456834//24981863//27371828//22608085 chr3:48465660-48465661(-) m6A CDS//intron       24284625//25456834//24981863//27371828//22608085 chr3:48465787-48465788(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr3:48465796-48465797(-) m6A CDS//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr3:48465898-48465899(-) m6A CDS//intron       24284625//25456834//24981863//27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PLXNB1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H23-5p
Interactor2: PLXNB1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg