Detail Information

Basic Information:


  VIRBase ID:  

VHID00193821

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:           PAX5:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H23-5p PAX5
miRBase
Accession/Entrez ID		 MIMAT0014705 5079
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - ALL3//BSAP

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PAX5
chr9:36941330(-) A-I      intronic
chr9:37007975(-) A-I      intronic
chr9:37013004(-) A-I      intronic
chr9:36932050(-) A-I      intronic
chr9:36916849(-) A-I      intronic
chr9:36929820(-) A-I      intronic
chr9:36918577(-) A-I      intronic
chr9:36918439(-) A-I      intronic
chr9:36916846(-) A-I      intronic
chr9:36916744(-) A-I      intronic
chr9:36918430(-) A-I      intronic
chr9:36918449(-) A-I      intronic
chr9:36918548(-) A-I      intronic
chr9:36916714(-) A-I      intronic
chr9:36909930(-) A-I      intronic
chr9:36909911(-) A-I      intronic
chr9:36908149(-) A-I      intronic
chr9:36908146(-) A-I      intronic
chr9:36908114(-) A-I      intronic
chr9:36908049(-) A-I      intronic
chr9:36918488(-) A-I      intronic
chr9:36908048(-) A-I      intronic
chr9:36908029(-) A-I      intronic
chr9:36907961(-) A-I      intronic
chr9:36864060(-) A-I      intronic
chr9:36864011(-) A-I      intronic
chr9:36931993(-) A-I      intronic
chr9:36918443(-) A-I      intronic
chr9:36930236(-) A-I      intronic
chr9:37007974(-) A-I      intronic
chr9:37007973(-) A-I      intronic
chr9:36991054(-) A-I      intronic
chr9:36991049(-) A-I      intronic
chr9:36991024(-) A-I      intronic
chr9:36990995(-) A-I      intronic
chr9:36990924(-) A-I      intronic
chr9:36982277(-) A-I      intronic
chr9:36982198(-) A-I      intronic
chr9:36973820(-) A-I      intronic
chr9:36973818(-) A-I      intronic
chr9:36973629(-) A-I      intronic
chr9:36929838(-) A-I      intronic
chr9:36863940(-) A-I      intronic
chr9:36863902(-) A-I      intronic
chr9:36932069(-) A-I      intronic
chr9:36935338(-) A-I      intronic
chr9:36935295(-) A-I      intronic
chr9:36935294(-) A-I      intronic
chr9:36933058(-) A-I      intronic
chr9:36916770(-) A-I      intronic
chr9:36952242(-) A-I      intronic
chr9:36918468(-) A-I      intronic
chr9:36973915(-) A-I      intronic
chr9:36908120(-) A-I      intronic
chr9:36918536(-) A-I      intronic
chr9:37013012(-) A-I      intronic
chr9:36952393(-) A-I      intronic
chr9:36964088(-) A-I      intronic
chr9:36908031(-) A-I      intronic
chr9:36973914(-) A-I      intronic
chr9:36964269(-) A-I      intronic
chr9:36954036(-) A-I      intronic
chr9:36932936(-) A-I      intronic
chr9:36864023(-) A-I      intronic
chr9:36953913(-) A-I      intronic
chr9:36864006(-) A-I      intronic
chr9:36908025(-) A-I      intronic
chr9:36924617(-) A-I      intronic
chr9:36929996(-) A-I      intronic
chr9:36909999(-) A-I      intronic
chr9:36944118(-) A-I      intronic
chr9:36915897(-) A-I      intronic
chr9:37008111(-) A-I      intronic
chr9:36954012(-) A-I      intronic
chr9:36915956(-) A-I      intronic
chr9:36952309(-) A-I      intronic
chr9:36908113(-) A-I      intronic
chr9:36952333(-) A-I      intronic
chr9:36949169(-) A-I      intronic
chr9:36910038(-) A-I      intronic
chr9:36910027(-) A-I      intronic
chr9:36935265(-) A-I      intronic
chr9:37008124(-) A-I      intronic
chr9:36908101(-) A-I      intronic
chr9:36856656(-) A-I      intronic
chr9:36863417(-) A-I      intronic
chr9:36949316(-) A-I      intronic
chr9:36909998(-) A-I      intronic
chr9:36954042(-) A-I      intronic
chr9:36952352(-) A-I      intronic
chr9:36935370(-) A-I      intronic
chr9:36915903(-) A-I      intronic
chr9:36954025(-) A-I      intronic
chr9:36910013(-) A-I      intronic
chr9:36929948(-) A-I      intronic
chr9:36953987(-) A-I      intronic
chr9:36909884(-) A-I      intronic
chr9:36949067(-) A-I      intronic
chr9:36953969(-) A-I      intronic
chr9:36863358(-) A-I      intronic
chr9:36927880(-) A-I      intronic
chr9:37008324(-) A-I      intronic
chr9:36951011(-) A-I      intronic
chr9:36953986(-) A-I      intronic
chr9:36909997(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PAX5
chr9:36952242(-) A-I intron -    15342557
chr9:36952309(-) A-I intron -    15342557
chr9:36952333(-) A-I intron -    15342557
chr9:36952334(-) A-I intron -    15342557
chr9:36952352(-) A-I intron -    15342557
chr9:36952385(-) A-I intron -    15342557
chr9:36952393(-) A-I intron -    15342557
chr9:36952419(-) A-I intron -    15342557
chr9:36952556(-) A-I intron -    15342557
chr9:36953002(-) A-I intron -    15342557
chr9:36953913(-) A-I intron -    15342557
chr9:36953969(-) A-I intron -    15342557   //22327324
chr9:36954012(-) A-I intron -    15342557
chr9:36954017(-) A-I intron -    15342557   //22327324
chr9:36954025(-) A-I intron -    15342557
chr9:36954036(-) A-I intron -    15342557
chr9:36954042(-) A-I intron -    15342557
chr9:36956813(-) A-I intron -    15342557
chr9:36957633(-) A-I intron -    15342557
chr9:36957887(-) A-I intron -    15342557
chr9:36941914(-) A-G intron -    22484847
chr9:36941921(-) A-G intron -    22484847
chr9:36941934(-) A-G intron -    22484847
chr9:36941940(-) A-G intron -    22484847
chr9:36941950(-) A-G intron -    22484847
chr9:36908113(-) A-G intron -    22484847
chr9:36908120(-) A-G intron -    22484847
chr9:36909989(-) A-G intron -    22484847
chr9:36918468(-) A-G intron -    22484847
chr9:36949208(-) G-T intron -    22484847
chr9:36950742(-) A-G intron -    22484847
chr9:36952334(-) A-G intron -    22484847
chr9:36952419(-) A-G intron -    22484847
chr9:36953969(-) A-G intron -    22484847
chr9:36953987(-) A-G intron -    22484847
chr9:36954017(-) A-G intron -    22484847
chr9:37013012(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PAX5
chr9:36837106-36837107(-) m6A 3'UTR       -
chr9:36837349-36837350(-) m6A 3'UTR       28052920
chr9:36837423-36837424(-) m6A 3'UTR       28052920
chr9:36837521-36837522(-) m6A 3'UTR       28052920
chr9:36837563-36837564(-) m6A 3'UTR       28052920
chr9:36837716-36837717(-) m6A 3'UTR       -
chr9:36838177-36838178(-) m6A 3'UTR       28052920
chr9:36838262-36838263(-) m6A 3'UTR       28052920
chr9:36838279-36838280(-) m6A 3'UTR       28052920
chr9:36838401-36838402(-) m6A 3'UTR       28052920
chr9:36838457-36838458(-) m6A 3'UTR       28052920
chr9:36838469-36838470(-) m6A 3'UTR       28052920
chr9:36838526-36838527(-) m6A 3'UTR       28052920
chr9:36838548-36838549(-) m6A 3'UTR       28052920
chr9:36838576-36838577(-) m6A 3'UTR       28052920
chr9:36838602-36838603(-) m6A 3'UTR       28052920
chr9:36838641-36838642(-) m6A 3'UTR       28052920
chr9:36838647-36838648(-) m6A 3'UTR       28052920
chr9:36838659-36838660(-) m6A 3'UTR       28052920
chr9:36838917-36838918(-) m6A 3'UTR       25456834
chr9:36838922-36838923(-) m6A 3'UTR       25456834
chr9:36839200-36839201(-) m6A 3'UTR       25456834//28052920
chr9:36839252-36839253(-) m6A 3'UTR       25456834//28052920
chr9:36839274-36839275(-) m6A 3'UTR       25456834//28052920
chr9:36839418-36839419(-) m6A 3'UTR       25456834//28052920
chr9:36839443-36839444(-) m6A 3'UTR       25456834//28052920
chr9:36839459-36839460(-) m6A 3'UTR       25456834//28052920
chr9:36839484-36839485(-) m6A 3'UTR       25456834//28052920
chr9:36839503-36839504(-) m6A 3'UTR       25456834//28052920
chr9:36839547-36839548(-) m6A 3'UTR       25456834//28052920
chr9:36839568-36839569(-) m6A 3'UTR       25456834//28052920
chr9:36839581-36839582(-) m6A 3'UTR       25456834//28052920
chr9:36839715-36839716(-) m6A 3'UTR       25456834//28052920
chr9:36839784-36839785(-) m6A 3'UTR       25456834//28052920
chr9:36839795-36839796(-) m6A 3'UTR       25456834//28052920
chr9:36839833-36839834(-) m6A 3'UTR       28052920
chr9:36840068-36840069(-) m6A 3'UTR       28052920
chr9:36840077-36840078(-) m6A 3'UTR       28052920
chr9:36840122-36840123(-) m6A 3'UTR       28052920
chr9:36840296-36840297(-) m6A 3'UTR       25456834//28052920
chr9:36840304-36840305(-) m6A 3'UTR       25456834//28052920
chr9:36840375-36840376(-) m6A 3'UTR       25456834//28052920
chr9:36840404-36840405(-) m6A 3'UTR       25456834//28052920
chr9:36840463-36840464(-) m6A 3'UTR       28052920
chr9:36840531-36840532(-) m6A 3'UTR//CDS       28052920

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PAX5
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H23-5p
Interactor2: PAX5

Evidence Support:


Prediction-Evidence cRep//miRanda//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...