Detail Information

Basic Information:


  VIRBase ID:  

VHID00193722

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H23-5p:           ITGA5:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H23-5p ITGA5
miRBase
Accession/Entrez ID		 MIMAT0014705 3678
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - CD49e//FNRA//VLA-5//VLA5A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ITGA5
chr12:54808730(-) A-I      intronic
chr12:54810143(-) A-I      intronic
chr12:54809877(-) A-I      intronic
chr12:54808863(-) A-I      intronic
chr12:54809883(-) A-I      intronic
chr12:54809939(-) A-I      intronic
chr12:54809930(-) A-I      intronic
chr12:54810149(-) A-I      intronic
chr12:54808506(-) A-I      intronic
chr12:54808931(-) A-I      intronic
chr12:54808463(-) A-I      intronic
chr12:54808626(-) A-I      intronic
chr12:54808441(-) A-I      intronic
chr12:54808568(-) A-I      intronic
chr12:54808466(-) A-I      intronic
chr12:54808509(-) A-I      intronic
chr12:54809950(-) A-I      intronic
chr12:54791755(-) A-I      intronic
chr12:54808625(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ITGA5
chr12:54808441(-) A-I intron -    22028664
chr12:54808455(-) A-I intron -    22028664
chr12:54808463(-) A-I intron -    22028664
chr12:54808466(-) A-I intron -    22028664
chr12:54808506(-) A-I intron -    22028664
chr12:54808509(-) A-I intron -    22028664
chr12:54808568(-) A-I intron -    22028664
chr12:54808625(-) A-I intron -    22028664
chr12:54808626(-) A-I intron -    22028664

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ITGA5
chr12:54789050-54789051(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535
chr12:54789095-54789096(-) Y 3'UTR//exon       26075521
chr12:54789099-54789100(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr12:54789109-54789110(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr12:54789118-54789119(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr12:54789252-54789253(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr12:54789268-54789269(-) m6A 3'UTR//exon       24284625//25456834//27773535//27371828
chr12:54789302-54789303(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828
chr12:54789359-54789360(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr12:54789381-54789382(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr12:54789411-54789412(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr12:54789417-54789418(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr12:54789423-54789424(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr12:54789469-54789470(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr12:54789533-54789534(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:54789544-54789545(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:54789570-54789571(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:54789599-54789600(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:54789614-54789615(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:54789629-54789630(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:54789636-54789637(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:54789712-54789713(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:54789725-54789726(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:54789774-54789775(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:54789825-54789826(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:54789839-54789840(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:54789876-54789877(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr12:54789945-54789946(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr12:54790042-54790043(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr12:54790059-54790060(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr12:54791062-54791063(-) m6A exon//intron       24284625//24209618//24981863//27773535
chr12:54791249-54791250(-) m6A CDS//exon       27773535
chr12:54792540-54792541(-) m6A exon//intron       27773535
chr12:54792599-54792600(-) m6A exon//intron       27773535
chr12:54793439-54793440(-) m6A CDS//exon//intron       27773535
chr12:54793570-54793571(-) m6A exon//intron       24284625//27773535
chr12:54793619-54793620(-) m6A exon//intron       24284625
chr12:54794674-54794675(-) m6A CDS//exon       27773535
chr12:54794734-54794735(-) m6A CDS//exon       27773535
chr12:54795180-54795181(-) m6A CDS//exon       27773535
chr12:54795187-54795188(-) m6A CDS//exon       27773535
chr12:54795208-54795209(-) m6A CDS//exon       27773535
chr12:54796072-54796073(-) m6A CDS//exon       27371828
chr12:54796105-54796106(-) m6A CDS//exon       27371828
chr12:54796805-54796806(-) m6A CDS//exon       27371828
chr12:54796817-54796818(-) m6A CDS//exon       27371828
chr12:54796865-54796866(-) m6A exon//intron       27371828
chr12:54796935-54796936(-) m6A exon//intron       24981863//27371828
chr12:54796945-54796946(-) m6A exon//intron       24981863//27371828
chr12:54796974-54796975(-) m6A CDS//exon       27371828
chr12:54797028-54797029(-) m6A CDS//exon       27773535//27371828
chr12:54797046-54797047(-) m6A CDS//exon       27773535//27371828
chr12:54797088-54797089(-) m6A CDS//exon       27773535//27371828
chr12:54797127-54797128(-) m6A exon//intron       27371828
chr12:54797193-54797194(-) m6A exon//intron       27371828
chr12:54797227-54797228(-) m6A exon//intron       27371828
chr12:54797273-54797274(-) m6A exon//intron       27371828
chr12:54797299-54797300(-) m6A exon//intron       27371828
chr12:54797319-54797320(-) m6A exon//intron       27371828
chr12:54797327-54797328(-) m6A exon//intron       27371828
chr12:54797355-54797356(-) m6A exon//intron       27371828
chr12:54797467-54797468(-) m6A CDS//exon       27773535//27371828
chr12:54807116-54807117(-) m6A exon//intron       27773535
chr12:54807160-54807161(-) m6A exon//intron       27773535
chr12:54812771-54812772(-) m6A CDS       27371828
chr12:54813000-54813001(-) m6A 5'UTR       24209618//24981863//27371828//27773536
chr12:54813069-54813070(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ITGA5
Chromatin K562 cells     -
Cytosol HeLa-S3 cells|K562 cells     -
ER-bound polysome Human T lymphocytes (Jurkat E6-1)     12923260
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H23-5p
Interactor2: ITGA5

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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