Basic Information:

  VIRBase ID:  

VHID00192669

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H22:  MIMAT0014704          CCDC24:  NR_146064     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H22	CCDC24
miRBase Accession/Entrez ID	MIMAT0014704	149473
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCDC24	chr1:44460007(+) A-I      ncRNA chr1:44459968(+) A-I      ncRNA chr1:44459862(+) A-I      ncRNA chr1:44459970(+) A-I      ncRNA chr1:44459908(+) A-I      ncRNA chr1:44459863(+) A-I      ncRNA chr1:44459974(+) A-I      ncRNA chr1:44460360(+) A-I      ncRNA chr1:44460049(+) A-I      ncRNA chr1:44460373(+) A-I      ncRNA chr1:44460000(+) A-I      ncRNA chr1:44459919(+) A-I      ncRNA chr1:44459992(+) A-I      ncRNA chr1:44458857(+) A-I      intronic chr1:44460230(+) A-I      ncRNA chr1:44460256(+) A-I      ncRNA chr1:44459956(+) A-I      ncRNA chr1:44459912(+) A-I      ncRNA chr1:44459922(+) A-I      ncRNA chr1:44459939(+) A-I      ncRNA chr1:44460053(+) A-I      ncRNA chr1:44460365(+) A-I      ncRNA chr1:44459932(+) A-I      ncRNA chr1:44460252(+) A-I      ncRNA chr1:44460242(+) A-I      ncRNA chr1:44459965(+) A-I      ncRNA chr1:44459931(+) A-I      ncRNA chr1:44460187(+) A-I      ncRNA chr1:44459967(+) A-I      ncRNA chr1:44460028(+) A-I      ncRNA chr1:44460324(+) A-I      ncRNA chr1:44460389(+) A-I      ncRNA chr1:44460249(+) A-I      ncRNA chr1:44459860(+) A-I      ncRNA chr1:44460254(+) A-I      ncRNA chr1:44460295(+) A-I      ncRNA chr1:44459918(+) A-I      ncRNA chr1:44460387(+) A-I      ncRNA chr1:44460320(+) A-I      ncRNA chr1:44460087(+) A-I      ncRNA chr1:44460059(+) A-I      ncRNA chr1:44459940(+) A-I      ncRNA

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	CCDC24	chr1:44459860(+) A-I intron -    15342557   //22327324 chr1:44459918(+) A-I intron -    15342557 chr1:44459931(+) A-I intron -    15342557 chr1:44459932(+) A-I intron -    15342557 chr1:44459940(+) A-I intron -    15342557 chr1:44459967(+) A-I intron -    15342557 chr1:44460028(+) A-I intron -    15342557 chr1:44460053(+) A-I intron -    15342557 chr1:44460059(+) A-I intron -    15342557 chr1:44460087(+) A-I intron -    15342557 chr1:44460187(+) A-I intron -    15342557   //15258596 chr1:44460242(+) A-I intron -    15342557   //15258596 chr1:44460249(+) A-I intron -    15342557 chr1:44460252(+) A-I intron -    15342557 chr1:44460254(+) A-I intron -    15342557 chr1:44460295(+) A-I intron -    15342557 chr1:44460320(+) A-I intron -    15342557   //15258596 chr1:44460324(+) A-I intron -    15342557   //15258596 chr1:44460365(+) A-I intron -    15342557   //15258596 chr1:44460387(+) A-I intron -    15342557   //15258596 chr1:44460389(+) A-I intron -    15342557   //15258596

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC24	chr1:44457363-44457364(+) m6A 5'UTR//exon//intron       25456834 chr1:44457400-44457401(+) m6A 5'UTR//exon//intron       25456834 chr1:44457650-44457651(+) m6A CDS//exon       24284625 chr1:44461466-44461467(+) m1A 3'UTR//CDS//exon       26863410 chr1:44462090-44462091(+) m6A 3'UTR//exon       24981863 chr1:44462130-44462131(+) m6A 3'UTR//exon       24981863 chr1:44462136-44462137(+) m6A 3'UTR//exon       24981863 chr1:44462160-44462161(+) m6A 3'UTR//exon       24981863 chr1:44462191-44462192(+) m6A 3'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CCDC24	Chromatin K562 cells     - Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H22
Interactor2: CCDC24

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg