Basic Information:

  VIRBase ID:  

VHID00192561

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H22:  MIMAT0014704          SAMD10:  NM_080621     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H22	SAMD10
miRBase Accession/Entrez ID	MIMAT0014704	140700
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C20orf136//dJ591C20//dJ591C20.7

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SAMD10	chr20:62607281(-) A-I      intronic chr20:62607357(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SAMD10	chr20:62605681-62605682(-) m6A 3'UTR       27773535 chr20:62605728-62605729(-) m6A 3'UTR       24284625//27773535 chr20:62605767-62605768(-) m6A 3'UTR       24284625//27773535 chr20:62605816-62605817(-) m6A 3'UTR       24284625 chr20:62606167-62606168(-) m6A 3'UTR       27773535 chr20:62606188-62606189(-) m6A 3'UTR       27773535 chr20:62606211-62606212(-) m6A 3'UTR       27773535 chr20:62606537-62606538(-) m6A 3'UTR       - chr20:62606560-62606561(-) m6A 3'UTR       - chr20:62606623-62606624(-) m6A 3'UTR       - chr20:62606690-62606691(-) m6A 3'UTR       25456834//27371828 chr20:62606723-62606724(-) m6A 3'UTR//exon       24284625//25456834//27371828 chr20:62606732-62606733(-) m6A 3'UTR//exon       24284625//25456834//27371828 chr20:62606771-62606772(-) m6A 3'UTR//exon       24284625//25456834//27371828 chr20:62606838-62606839(-) m6A 3'UTR//exon       24284625//25456834//27371828 chr20:62606844-62606845(-) m6A 3'UTR//exon       24284625//25456834//27371828 chr20:62608587-62608588(-) m6A CDS//exon       24284625//27371828 chr20:62608678-62608679(-) m6A CDS//exon       24284625//27371828//27773536 chr20:62608732-62608733(-) m6A CDS//exon       24284625//27371828 chr20:62609602-62609603(-) m6A CDS//exon//intron       27371828 chr20:62609630-62609631(-) m6A CDS//exon//intron       27371828 chr20:62611255-62611256(-) m6A exon       27371828 chr20:62611355-62611356(-) m6A exon       27371828

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SAMD10	Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H22
Interactor2: SAMD10

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg