Detail Information

Basic Information:


  VIRBase ID:  

VHID00192429

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H22:           OSCAR:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H22 OSCAR
miRBase
Accession/Entrez ID		 MIMAT0014704 126014
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - PIgR-3//PIGR3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR OSCAR
chr19:54601809(-) A-I      intronic
chr19:54601739(-) A-I      intronic
chr19:54601010(-) A-I      intronic
chr19:54602034(-) A-I      intronic
chr19:54601761(-) A-I      intronic
chr19:54601760(-) A-I      intronic
chr19:54601791(-) A-I      intronic
chr19:54602012(-) A-I      intronic
chr19:54602106(-) A-I      intronic
chr19:54602187(-) A-I      intronic
chr19:54602219(-) A-I      intronic
chr19:54601061(-) A-I      intronic
chr19:54601618(-) A-I      intronic
chr19:54601740(-) A-I      intronic
chr19:54601699(-) A-I      intronic
chr19:54601626(-) A-I      intronic
chr19:54602612(-) A-I      intronic
chr19:54600936(-) A-I      intronic
chr19:54600943(-) A-I      intronic
chr19:54601157(-) A-I      intronic
chr19:54601156(-) A-I      intronic
chr19:54601151(-) A-I      intronic
chr19:54601102(-) A-I      intronic
chr19:54602515(-) A-I      intronic
chr19:54602169(-) A-I      intronic
chr19:54602009(-) A-I      intronic
chr19:54600946(-) A-I      intronic
chr19:54601002(-) A-I      intronic
chr19:54601795(-) A-I      intronic
chr19:54602632(-) A-I      intronic
chr19:54600976(-) A-I      intronic
chr19:54602103(-) A-I      intronic
chr19:54601772(-) A-I      intronic
chr19:54602147(-) A-I      intronic
chr19:54602097(-) A-I      intronic
chr19:54601591(-) A-I      intronic
chr19:54601931(-) A-I      intronic
chr19:54602568(-) A-I      intronic
chr19:54601665(-) A-I      intronic
chr19:54601042(-) A-I      intronic
chr19:54601110(-) A-I      intronic
chr19:54601934(-) A-I      intronic
chr19:54601026(-) A-I      intronic
chr19:54601883(-) A-I      intronic
chr19:54601631(-) A-I      intronic
chr19:54601800(-) A-I      intronic
chr19:54600951(-) A-I      intronic
chr19:54601083(-) A-I      intronic
chr19:54600970(-) A-I      intronic
chr19:54601685(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase OSCAR
chr19:54598038-54598039(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598050-54598051(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598063-54598064(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598087-54598088(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598111-54598112(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598144-54598145(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598153-54598154(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598173-54598174(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598261-54598262(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598277-54598278(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598359-54598360(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598418-54598419(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598430-54598431(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598460-54598461(-) m6A 3'UTR       25456834//24981863//27371828
chr19:54598513-54598514(-) m6A 3'UTR//CDS       25456834//27371828
chr19:54598591-54598592(-) m6A 3'UTR//CDS       -
chr19:54598621-54598622(-) m6A 3'UTR//CDS       -
chr19:54598671-54598672(-) m6A 3'UTR//intron       25456834
chr19:54598691-54598692(-) m6A 3'UTR//intron       25456834
chr19:54598732-54598733(-) m6A 3'UTR//intron       25456834//27371828
chr19:54598775-54598776(-) m6A 3'UTR//intron       25456834//27371828
chr19:54598838-54598839(-) m6A 3'UTR//intron       25456834//27371828
chr19:54598845-54598846(-) m6A 3'UTR//intron       25456834//27371828
chr19:54598874-54598875(-) m6A 3'UTR//intron       25456834//27371828
chr19:54598881-54598882(-) m6A 3'UTR//intron       25456834//27371828
chr19:54598918-54598919(-) m6A 3'UTR//intron       25456834//27371828
chr19:54598976-54598977(-) m6A CDS//intron       25456834//27371828//27773536
chr19:54598992-54598993(-) m6A CDS//intron       25456834//27371828//27773536
chr19:54599029-54599030(-) m6A CDS//intron       25456834//27371828
chr19:54599066-54599067(-) m6A 3'UTR//CDS//intron       27371828
chr19:54599080-54599081(-) m6A 3'UTR//CDS//intron       27371828
chr19:54600332-54600333(-) m6A CDS//intron       -
chr19:54603052-54603053(-) m6A CDS//intron       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate OSCAR
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H22
Interactor2: OSCAR

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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