Basic Information:

  VIRBase ID:  

VHID00192183

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H22:  MIMAT0014704          RCCD1:  NM_033544     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H22	RCCD1
miRBase Accession/Entrez ID	MIMAT0014704	91433
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RCCD1	chr15:91502705(+) A-I      intronic chr15:91502077(+) A-I      intronic chr15:91502719(+) A-I      intronic chr15:91502731(+) A-I      intronic chr15:91502779(+) A-I      intronic chr15:91502778(+) A-I      intronic chr15:91502769(+) A-I      intronic chr15:91501296(+) A-I      intronic chr15:91502800(+) A-I      intronic chr15:91505866(+) A-I      3'UTR

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RCCD1	chr15:91498172-91498173(+) m6A 5'UTR//exon       - chr15:91498642-91498643(+) m6A exon//intron       - chr15:91498710-91498711(+) m6A exon//intron       - chr15:91498736-91498737(+) m6A exon//intron       - chr15:91498754-91498755(+) m6A exon//intron       24981863 chr15:91500278-91500279(+) m6A exon//intron       - chr15:91500839-91500840(+) m6A CDS//exon//intron       24284625//24209618 chr15:91500855-91500856(+) m6A CDS//exon//intron       24284625 chr15:91503131-91503132(+) m6A 3'UTR//CDS//exon       - chr15:91503192-91503193(+) m6A 3'UTR//CDS//exon       - chr15:91503212-91503213(+) m6A 3'UTR//CDS//exon       - chr15:91503800-91503801(+) m6A exon//intron       24284625 chr15:91504197-91504198(+) m6A exon//intron       24284625 chr15:91504216-91504217(+) m6A exon//intron       24284625//25456834 chr15:91504256-91504257(+) m6A 3'UTR//CDS//exon       24284625//25456834//24981863//22608085 chr15:91504316-91504317(+) m6A exon//intron       24284625//25456834//24981863//22608085 chr15:91504332-91504333(+) m6A exon//intron       24284625//25456834//24981863//22575960//22608085 chr15:91504368-91504369(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr15:91504408-91504409(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr15:91504413-91504414(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr15:91504436-91504437(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr15:91504440-91504441(+) m6A exon//intron       24981863 chr15:91504467-91504468(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr15:91504476-91504477(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr15:91504519-91504520(+) m6A exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr15:91504617-91504618(+) m6A exon//intron       24284625//24209618//25456834//24981863//22608085 chr15:91504806-91504807(+) m6A exon//intron       24284625//24209618//25456834//24981863//22608085 chr15:91504857-91504858(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr15:91504874-91504875(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr15:91504961-91504962(+) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//22575960//22608085 chr15:91504981-91504982(+) Gm 3'UTR//CDS//exon       - chr15:91505034-91505035(+) m6A 3'UTR//exon//intron       24284625//24209618//24981863//22608085 chr15:91505056-91505057(+) m6A 3'UTR//exon//intron       24284625//24209618//24981863//22608085 chr15:91505136-91505137(+) m6A 3'UTR//exon//intron       24284625//24209618//24981863//22608085 chr15:91505155-91505156(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr15:91505175-91505176(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr15:91505206-91505207(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr15:91505223-91505224(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr15:91505231-91505232(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RCCD1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleus HeLa-S3 cells|K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H22
Interactor2: RCCD1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//RNAHybrid//Targetscan
Support Database	RepTar//VmiReg