Basic Information:

  VIRBase ID:  

VHID00190999

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H22:  MIMAT0014704          AGPAT5:  NM_018361     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H22	AGPAT5
miRBase Accession/Entrez ID	MIMAT0014704	55326
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	1AGPAT5//LPAATE

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	AGPAT5	chr8:6574311(+) A-I      intronic chr8:6570765(+) A-I      intronic chr8:6571098(+) A-I      intronic chr8:6574366(+) A-I      intronic chr8:6574368(+) A-I      intronic chr8:6571187(+) A-I      intronic chr8:6574100(+) A-I      intronic chr8:6599917(+) A-I      intronic chr8:6570725(+) A-I      intronic chr8:6574101(+) A-I      intronic chr8:6570774(+) A-I      intronic chr8:6571093(+) A-I      intronic chr8:6609591(+) A-I      intronic chr8:6571174(+) A-I      intronic chr8:6574060(+) A-I      intronic chr8:6573824(+) A-I      intronic chr8:6574234(+) A-I      intronic chr8:6609542(+) A-I      intronic chr8:6571204(+) A-I      intronic chr8:6574260(+) A-I      intronic chr8:6570677(+) A-I      intronic chr8:6571214(+) A-I      intronic chr8:6609536(+) A-I      intronic chr8:6609578(+) A-I      intronic chr8:6579434(+) A-I      intronic chr8:6570700(+) A-I      intronic chr8:6571278(+) A-I      intronic chr8:6609613(+) A-I      intronic chr8:6574092(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	AGPAT5	chr8:6570700(+) A-G intron -    22484847 chr8:6570774(+) A-G intron -    22484847 chr8:6571093(+) A-G intron -    22484847 chr8:6571094(+) A-G intron -    22484847 chr8:6571174(+) A-G intron -    22484847 chr8:6571204(+) A-G intron -    22484847 chr8:6571214(+) A-G intron -    22484847 chr8:6571278(+) A-G intron -    22484847 chr8:6573961(+) A-G intron -    22484847 chr8:6573971(+) A-G intron -    22484847 chr8:6574092(+) A-G intron -    22484847 chr8:6574234(+) A-G intron -    22484847 chr8:6613907(+) G-A intron -    22484847 chr8:6613908(+) G-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	AGPAT5	chr8:6566767-6566768(+) Cm intron       - chr8:6612644-6612645(+) m6A 3'UTR//CDS//exon//intron       27773535//22608085 chr8:6612650-6612651(+) m6A 3'UTR//CDS//exon//intron       27773535//22608085 chr8:6614774-6614775(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr8:6614853-6614854(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr8:6614870-6614871(+) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr8:6614909-6614910(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr8:6614927-6614928(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr8:6615080-6615081(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr8:6615168-6615169(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr8:6615767-6615768(+) Y 3'UTR       25219674 chr8:6615975-6615976(+) m6A 3'UTR       24284625//24981863 chr8:6616028-6616029(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr8:6616128-6616129(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr8:6616230-6616231(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr8:6616256-6616257(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085 chr8:6616278-6616279(+) m6A 3'UTR       24284625//24981863//22608085 chr8:6616292-6616293(+) m6A 3'UTR       24284625//24981863//22608085 chr8:6616320-6616321(+) m6A 3'UTR       24284625//24981863//22608085 chr8:6616410-6616411(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr8:6616508-6616509(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr8:6616588-6616589(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr8:6616631-6616632(+) m6A 3'UTR       24284625//24981863//26404942//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	AGPAT5	Chromatin K562 cells     - Cytosol K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H22
Interactor2: AGPAT5

Evidence Support:

Prediction-Evidence	miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg