Basic Information:

  VIRBase ID:  

VHID00190609

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H22:  MIMAT0014704          PACSIN1:  NM_020804     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H22	PACSIN1
miRBase Accession/Entrez ID	MIMAT0014704	29993
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SDPI

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PACSIN1	chr6:34457927(+) A-I      intronic chr6:34447812(+) A-I      intronic chr6:34447777(+) A-I      intronic chr6:34447800(+) A-I      intronic chr6:34465968(+) A-I      intronic chr6:34454840(+) A-I      intronic chr6:34449089(+) A-I      intronic chr6:34466036(+) A-I      intronic chr6:34467494(+) A-I      intronic chr6:34449262(+) A-I      intronic chr6:34457940(+) A-I      intronic chr6:34449109(+) A-I      intronic chr6:34448962(+) A-I      intronic chr6:34466303(+) A-I      intronic chr6:34450077(+) A-I      intronic chr6:34449286(+) A-I      intronic chr6:34439887(+) A-I      intronic chr6:34454689(+) A-I      intronic chr6:34454826(+) A-I      intronic chr6:34445035(+) A-I      intronic chr6:34438779(+) A-I      intronic chr6:34466459(+) A-I      intronic chr6:34445034(+) A-I      intronic chr6:34445012(+) A-I      intronic chr6:34445086(+) A-I      intronic chr6:34466041(+) A-I      intronic chr6:34449101(+) A-I      intronic chr6:34439917(+) A-I      intronic chr6:34467293(+) A-I      intronic chr6:34470987(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PACSIN1	chr6:34497243-34497244(+) m6A CDS//exon       24981863 chr6:34500257-34500258(+) m6A CDS       25456834 chr6:34501538-34501539(+) m6A 3'UTR       25456834 chr6:34501577-34501578(+) m6A 3'UTR       25456834 chr6:34501597-34501598(+) m6A 3'UTR       25456834 chr6:34501703-34501704(+) m6A 3'UTR       25456834 chr6:34501714-34501715(+) m6A 3'UTR       25456834 chr6:34501719-34501720(+) m6A 3'UTR       25456834 chr6:34501760-34501761(+) m6A 3'UTR       25456834 chr6:34501804-34501805(+) m6A 3'UTR       25456834 chr6:34501840-34501841(+) m6A 3'UTR       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PACSIN1	Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H22
Interactor2: PACSIN1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg