Detail Information

Basic Information:


  VIRBase ID:  

VHID00190481

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H22:           TRUB2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H22 TRUB2
miRBase
Accession/Entrez ID		 MIMAT0014704 26995
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - CLONE24922

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TRUB2
chr9:131083015(-) A-I      intronic
chr9:131081658(-) A-I      intronic
chr9:131081651(-) A-I      intronic
chr9:131081447(-) A-I      intronic
chr9:131081407(-) A-I      intronic
chr9:131074393(-) A-I      intronic
chr9:131074370(-) A-I      intronic
chr9:131083206(-) A-I      intronic
chr9:131083232(-) A-I      intronic
chr9:131083241(-) A-I      intronic
chr9:131082075(-) A-I      intronic
chr9:131074850(-) A-I      intronic
chr9:131074842(-) A-I      intronic
chr9:131082067(-) A-I      intronic
chr9:131082057(-) A-I      intronic
chr9:131074802(-) A-I      intronic
chr9:131081416(-) A-I      intronic
chr9:131082063(-) A-I      intronic
chr9:131082998(-) A-I      intronic
chr9:131081561(-) A-I      intronic
chr9:131081542(-) A-I      intronic
chr9:131081505(-) A-I      intronic
chr9:131074847(-) A-I      intronic
chr9:131071556(-) A-I      3'UTR
chr9:131071517(-) A-I      3'UTR
chr9:131071563(-) A-I      3'UTR
chr9:131082937(-) A-I      intronic
chr9:131082883(-) A-I      intronic
chr9:131075089(-) A-I      intronic
chr9:131074555(-) A-I      intronic
chr9:131081770(-) A-I      intronic
chr9:131082554(-) A-I      intronic
chr9:131082587(-) A-I      intronic
chr9:131081264(-) A-I      intronic
chr9:131081671(-) A-I      intronic
chr9:131075493(-) A-I      intronic
chr9:131081014(-) A-I      intronic
chr9:131071552(-) A-I      3'UTR
chr9:131071573(-) A-I      3'UTR
chr9:131071601(-) A-I      3'UTR
chr9:131071585(-) A-I      3'UTR
chr9:131071578(-) A-I      3'UTR
chr9:131071524(-) A-I      3'UTR
chr9:131071562(-) A-I      3'UTR
chr9:131071546(-) A-I      3'UTR
chr9:131071579(-) A-I      3'UTR
chr9:131071533(-) A-I      3'UTR
chr9:131082945(-) A-I      intronic
chr9:131080547(-) A-I      intronic
chr9:131081648(-) A-I      intronic
chr9:131075163(-) A-I      intronic
chr9:131075088(-) A-I      intronic
chr9:131075410(-) A-I      intronic
chr9:131080995(-) A-I      intronic
chr9:131082056(-) A-I      intronic
chr9:131081295(-) A-I      intronic
chr9:131074509(-) A-I      intronic
chr9:131080540(-) A-I      intronic
chr9:131075561(-) A-I      intronic
chr9:131082679(-) A-I      intronic
chr9:131075645(-) A-I      intronic
chr9:131082070(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TRUB2
chr9:131071579(-) A-I exon 3'UTR    22327324
chr9:131071723(-) A-I exon 3'UTR    21960545
chr9:131071533(-) A-G exon 3'UTR    22484847
chr9:131071538(-) A-G exon 3'UTR    22484847
chr9:131071562(-) A-G exon 3'UTR    22484847
chr9:131071578(-) A-G exon 3'UTR    22484847
chr9:131071579(-) A-G exon 3'UTR    22484847
chr9:131075164(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TRUB2
chr9:131068353-131068354(-) m6A 3'UTR       27773535
chr9:131068439-131068440(-) m6A 3'UTR       27773535
chr9:131068483-131068484(-) m6A 3'UTR       24209618//27773535
chr9:131068528-131068529(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr9:131071421-131071422(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr9:131071458-131071459(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr9:131071467-131071468(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr9:131071603-131071604(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:131071624-131071625(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:131071633-131071634(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:131071640-131071641(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:131071660-131071661(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:131071684-131071685(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:131071712-131071713(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:131071719-131071720(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:131071755-131071756(-) Cm 3'UTR       -
chr9:131071769-131071770(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr9:131071784-131071785(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr9:131071880-131071881(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr9:131071916-131071917(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr9:131072000-131072001(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:131072010-131072011(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:131072027-131072028(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr9:131072082-131072083(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr9:131072089-131072090(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr9:131073855-131073856(-) m6A CDS//exon       27773535
chr9:131076095-131076096(-) m6A CDS//exon       27773535
chr9:131077893-131077894(-) m6A CDS//exon       27773535
chr9:131079464-131079465(-) m6A CDS//exon       24284625
chr9:131079497-131079498(-) m6A CDS//exon       24284625
chr9:131083977-131083978(-) m6A CDS//exon       24284625//27773535
chr9:131084234-131084235(-) m6A intron       24284625
chr9:131084239-131084240(-) m6A intron       24284625
chr9:131084753-131084754(-) m6A 5'UTR       24284625//24981863
chr9:131084776-131084777(-) m6A 5'UTR       24284625//24981863
chr9:131084794-131084795(-) m6A 5'UTR       24284625//25456834//24981863//27773535//22608085
chr9:131084808-131084809(-) m6A 5'UTR       24284625//25456834//24981863//27773535//22608085
chr9:131084873-131084874(-) m6A 5'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr9:131084915-131084916(-) m6A 5'UTR       24284625//25456834//24981863//27371828//22575960//22608085
chr9:131084946-131084947(-) m6A 5'UTR       24284625//25456834//24981863//27371828//22575960//22608085
chr9:131085003-131085004(-) m6A 5'UTR       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TRUB2
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H22
Interactor2: TRUB2

Evidence Support:


Prediction-Evidence miRanda//Rep//RNAHybrid//Targetscan
Support Database RepTar//VmiReg

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