Basic Information:

  VIRBase ID:  

VHID00189505

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H22:  MIMAT0014704          HIP1R:  NM_001303097     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H22	HIP1R
miRBase Accession/Entrez ID	MIMAT0014704	9026
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	HIP12//HIP3//ILWEQ

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	HIP1R	chr12:123326000(+) A-I      intronic chr12:123326001(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HIP1R	chr12:123319543-123319544(+) m6A exon       24209618 chr12:123319548-123319549(+) m6A exon       24209618 chr12:123320039-123320040(+) m6A 5'UTR//exon//intron       24284625//24209618 chr12:123320073-123320074(+) m6A 5'UTR//exon//intron       24284625//24209618 chr12:123320101-123320102(+) m6A CDS//exon//intron       24284625//24209618 chr12:123320184-123320185(+) m6A CDS//exon//intron       24284625//24209618 chr12:123340129-123340130(+) m6A CDS//exon       24209618 chr12:123340379-123340380(+) m6A CDS//exon       24209618 chr12:123340428-123340429(+) m6A CDS//exon       24209618 chr12:123340985-123340986(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960 chr12:123341595-123341596(+) m6A CDS//exon       24284625//24209618 chr12:123341652-123341653(+) m6A CDS//exon       24284625//24209618 chr12:123341684-123341685(+) m6A CDS//exon       24284625//24209618 chr12:123341992-123341993(+) m6A exon//intron       26404942 chr12:123342030-123342031(+) m6A exon//intron       24284625//26404942 chr12:123342106-123342107(+) m6A exon//intron       24284625//24981863//26404942//22608085 chr12:123342151-123342152(+) m6A exon//intron       24284625//24981863//22608085 chr12:123342161-123342162(+) m6A exon//intron       24284625//24981863//22608085 chr12:123342196-123342197(+) m6A exon//intron       24284625//24981863//22608085 chr12:123342204-123342205(+) m6A exon//intron       24284625//24981863//22608085 chr12:123343616-123343617(+) m6A CDS//exon       24284625 chr12:123343974-123343975(+) m6A CDS//exon       24209618 chr12:123343980-123343981(+) m6A CDS//exon       24209618 chr12:123344328-123344329(+) m6A CDS//exon       24284625//24209618//24981863 chr12:123344613-123344614(+) m6A CDS//exon       24284625//24209618 chr12:123344830-123344831(+) m6A exon//intron       24209618 chr12:123345003-123345004(+) m6A CDS//exon//intron       24209618 chr12:123345014-123345015(+) m6A CDS//exon//intron       24209618 chr12:123346012-123346013(+) m6A CDS//exon       24284625 chr12:123346048-123346049(+) m6A CDS//exon       24284625 chr12:123346053-123346054(+) m6A CDS//exon       24284625 chr12:123346155-123346156(+) m6A exon//intron       24284625 chr12:123346292-123346293(+) m6A CDS//exon       24284625 chr12:123346364-123346365(+) m6A 3'UTR//exon       24284625//24209618//24981863 chr12:123346520-123346521(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr12:123346539-123346540(+) m6A 3'UTR//exon       24284625//24209618//24981863//22608085 chr12:123346665-123346666(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr12:123346697-123346698(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr12:123346828-123346829(+) m6A 3'UTR//exon       25456834 chr12:123346958-123346959(+) m6A 3'UTR//exon       24284625 chr12:123347155-123347156(+) m6A 3'UTR       24284625 chr12:123347168-123347169(+) m6A 3'UTR       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	HIP1R	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H22
Interactor2: HIP1R

Evidence Support:

Prediction-Evidence	cRep//miRanda//RNAHybrid
Support Database	RepTar//VmiReg