Basic Information:

  VIRBase ID:  

VHID00187067

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H20:  MIMAT0014702          ST6GALNAC3:  NM_001349106     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H20	ST6GALNAC3
miRBase Accession/Entrez ID	MIMAT0014702	256435
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PRO7177//SIAT7C//ST6GALNACIII//STY

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ST6GALNAC3	chr1:76917075(+) A-I      intronic chr1:76917054(+) A-I      intronic chr1:76917040(+) A-I      intronic chr1:76917027(+) A-I      intronic chr1:76917021(+) A-I      intronic chr1:76917011(+) A-I      intronic chr1:76916995(+) A-I      intronic chr1:76917889(+) A-I      intronic chr1:76916993(+) A-I      intronic chr1:76916983(+) A-I      intronic chr1:76916962(+) A-I      intronic chr1:76601767(+) A-I      intronic chr1:76917058(+) A-I      intronic chr1:76917072(+) A-I      intronic chr1:76917057(+) A-I      intronic chr1:76588910(+) A-I      intronic chr1:76917056(+) A-I      intronic chr1:76560794(+) A-I      intronic chr1:76570589(+) A-I      intronic chr1:77013354(+) A-I      intronic chr1:77027191(+) A-I      intronic chr1:77013352(+) A-I      intronic chr1:77011459(+) A-I      intronic chr1:76844788(+) A-I      intronic chr1:76701741(+) A-I      intronic chr1:76589670(+) A-I      intronic chr1:76589645(+) A-I      intronic chr1:76916950(+) A-I      intronic chr1:76701686(+) A-I      intronic chr1:76700989(+) A-I      intronic chr1:77027219(+) A-I      intronic chr1:77027197(+) A-I      intronic chr1:77027195(+) A-I      intronic chr1:77027193(+) A-I      intronic chr1:76925161(+) A-I      intronic chr1:76624967(+) A-I      intronic chr1:76584768(+) A-I      intronic chr1:76584753(+) A-I      intronic chr1:76624991(+) A-I      intronic chr1:76662398(+) A-I      intronic chr1:76589671(+) A-I      intronic chr1:76701684(+) A-I      intronic chr1:76579610(+) A-I      intronic chr1:76701692(+) A-I      intronic chr1:76861916(+) A-I      intronic chr1:76861917(+) A-I      intronic chr1:76882336(+) A-I      intronic chr1:76579628(+) A-I      intronic chr1:76580475(+) A-I      intronic chr1:76604758(+) A-I      intronic chr1:76861911(+) A-I      intronic chr1:76580524(+) A-I      intronic chr1:76580625(+) A-I      intronic chr1:76908857(+) A-I      intronic chr1:76579613(+) A-I      intronic chr1:76908968(+) A-I      intronic chr1:76921807(+) A-I      intronic chr1:76921839(+) A-I      intronic chr1:76604764(+) A-I      intronic chr1:76925155(+) A-I      intronic chr1:76580619(+) A-I      intronic chr1:76588996(+) A-I      intronic chr1:76589005(+) A-I      intronic chr1:76589521(+) A-I      intronic chr1:76589683(+) A-I      intronic chr1:76604775(+) A-I      intronic chr1:76922095(+) A-I      intronic chr1:77071446(+) A-I      intronic chr1:76580506(+) A-I      intronic chr1:76663851(+) A-I      intronic chr1:76580493(+) A-I      intronic chr1:76580516(+) A-I      intronic chr1:76580525(+) A-I      intronic chr1:76588801(+) A-I      intronic chr1:76589464(+) A-I      intronic chr1:76921778(+) A-I      intronic chr1:76921841(+) A-I      intronic chr1:77071429(+) A-I      intronic chr1:77013418(+) A-I      intronic chr1:76580484(+) A-I      intronic chr1:77080409(+) A-I      intronic chr1:76663995(+) A-I      intronic chr1:76580500(+) A-I      intronic chr1:76844187(+) A-I      intronic chr1:76701816(+) A-I      intronic chr1:76580587(+) A-I      intronic chr1:76579639(+) A-I      intronic chr1:76579711(+) A-I      intronic chr1:76579737(+) A-I      intronic chr1:76922063(+) A-I      intronic chr1:76580549(+) A-I      intronic chr1:76974081(+) A-I      intronic chr1:76580360(+) A-I      intronic chr1:77066833(+) A-I      intronic chr1:76589472(+) A-I      intronic chr1:76922162(+) A-I      intronic chr1:76830094(+) A-I      intronic chr1:76650103(+) A-I      intronic chr1:76579728(+) A-I      intronic chr1:76830107(+) A-I      intronic chr1:77013454(+) A-I      intronic chr1:76580447(+) A-I      intronic chr1:76579767(+) A-I      intronic chr1:77013332(+) A-I      intronic chr1:76663746(+) A-I      intronic chr1:76663983(+) A-I      intronic chr1:76580455(+) A-I      intronic chr1:76663816(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ST6GALNAC3	chr1:76633392(+) A-I intron -    22028664 chr1:76633410(+) A-I intron -    22028664 chr1:76633428(+) A-I intron -    22028664 chr1:76633437(+) A-I intron -    22028664 chr1:76633469(+) A-I intron -    22028664 chr1:76633494(+) A-I intron -    22028664 chr1:76633514(+) A-I intron -    22028664 chr1:76633515(+) A-I intron -    22028664 chr1:76633575(+) A-I intron -    22028664 chr1:76633580(+) A-I intron -    22028664

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ST6GALNAC3	chr1:76877801-76877802(+) m6A CDS//exon       22608085 chr1:76877894-76877895(+) m6A CDS//exon       24981863//22608085 chr1:76877946-76877947(+) m6A CDS//exon       24981863//22608085 chr1:76878004-76878005(+) m6A CDS//exon       24981863//22608085 chr1:76878088-76878089(+) m6A CDS//exon       22608085 chr1:76878098-76878099(+) m6A CDS//exon       22608085 chr1:77042562-77042563(+) m6A exon//intron       22608085 chr1:77094343-77094344(+) m6A CDS       22608085 chr1:77094382-77094383(+) m6A CDS       24981863//22608085 chr1:77094474-77094475(+) m6A CDS       24981863//22608085 chr1:77094479-77094480(+) m6A CDS       24981863//22608085 chr1:77094587-77094588(+) m6A 3'UTR       24209618//25456834//24981863//22608085 chr1:77094655-77094656(+) m6A 3'UTR       24209618//24981863//22608085 chr1:77094941-77094942(+) m6A 3'UTR       25456834//24981863//22608085 chr1:77094955-77094956(+) m6A 3'UTR       25456834//24981863//22608085 chr1:77095093-77095094(+) m6A 3'UTR       24209618//24981863//22608085 chr1:77095128-77095129(+) m6A 3'UTR       24209618//24981863//22608085 chr1:77095213-77095214(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ST6GALNAC3	Exosome Blood     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H20
Interactor2: ST6GALNAC3

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg