Basic Information:

  VIRBase ID:  

VHID00186500

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H20:  MIMAT0014702          AKIRIN1:  NM_024595     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H20	AKIRIN1
miRBase Accession/Entrez ID	MIMAT0014702	79647
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C1orf108//STRF2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	AKIRIN1	chr1:39470791(+) A-I      3'UTR chr1:39461527(+) A-I      intronic chr1:39462368(+) A-I      intronic chr1:39466146(+) A-I      intronic chr1:39470833(+) A-I      3'UTR chr1:39470822(+) A-I      3'UTR chr1:39461544(+) A-I      intronic chr1:39470794(+) A-I      3'UTR chr1:39470817(+) A-I      3'UTR chr1:39466149(+) A-I      intronic chr1:39470816(+) A-I      3'UTR chr1:39466156(+) A-I      intronic chr1:39458971(+) A-I      intronic chr1:39470807(+) A-I      3'UTR chr1:39461545(+) A-I      intronic chr1:39461553(+) A-I      intronic chr1:39458982(+) A-I      intronic chr1:39459015(+) A-I      intronic chr1:39461551(+) A-I      intronic chr1:39459590(+) A-I      intronic chr1:39461584(+) A-I      intronic chr1:39461590(+) A-I      intronic chr1:39462257(+) A-I      intronic chr1:39466113(+) A-I      intronic chr1:39466120(+) A-I      intronic chr1:39466119(+) A-I      intronic chr1:39460551(+) A-I      intronic chr1:39466145(+) A-I      intronic chr1:39465799(+) A-I      intronic chr1:39465684(+) A-I      intronic chr1:39464439(+) A-I      intronic chr1:39464431(+) A-I      intronic chr1:39463265(+) A-I      intronic chr1:39463221(+) A-I      intronic chr1:39462477(+) A-I      intronic chr1:39462432(+) A-I      intronic chr1:39462412(+) A-I      intronic chr1:39462377(+) A-I      intronic chr1:39462338(+) A-I      intronic chr1:39461612(+) A-I      intronic chr1:39461615(+) A-I      intronic chr1:39461853(+) A-I      intronic chr1:39461867(+) A-I      intronic chr1:39461884(+) A-I      intronic chr1:39461893(+) A-I      intronic chr1:39461908(+) A-I      intronic chr1:39461552(+) A-I      intronic chr1:39461546(+) A-I      intronic chr1:39462123(+) A-I      intronic chr1:39462151(+) A-I      intronic chr1:39462319(+) A-I      intronic chr1:39462328(+) A-I      intronic chr1:39461543(+) A-I      intronic chr1:39461529(+) A-I      intronic chr1:39461504(+) A-I      intronic chr1:39460737(+) A-I      intronic chr1:39460724(+) A-I      intronic chr1:39460624(+) A-I      intronic chr1:39460457(+) A-I      intronic chr1:39460405(+) A-I      intronic chr1:39460319(+) A-I      intronic chr1:39460277(+) A-I      intronic chr1:39460258(+) A-I      intronic chr1:39459663(+) A-I      intronic chr1:39459621(+) A-I      intronic chr1:39459541(+) A-I      intronic chr1:39459547(+) A-I      intronic chr1:39459415(+) A-I      intronic chr1:39459286(+) A-I      intronic chr1:39459258(+) A-I      intronic chr1:39459224(+) A-I      intronic chr1:39459215(+) A-I      intronic chr1:39458987(+) A-I      intronic chr1:39461540(+) A-I      intronic chr1:39468186(+) A-I      intronic chr1:39468178(+) A-I      intronic chr1:39468153(+) A-I      intronic chr1:39468147(+) A-I      intronic chr1:39467102(+) A-I      intronic chr1:39466467(+) A-I      intronic chr1:39461556(+) A-I      intronic chr1:39462475(+) A-I      intronic chr1:39467040(+) A-I      intronic chr1:39460426(+) A-I      intronic chr1:39462074(+) A-I      intronic chr1:39460436(+) A-I      intronic chr1:39459578(+) A-I      intronic chr1:39460423(+) A-I      intronic chr1:39461798(+) A-I      intronic chr1:39465785(+) A-I      intronic chr1:39459587(+) A-I      intronic chr1:39460564(+) A-I      intronic chr1:39461866(+) A-I      intronic chr1:39462090(+) A-I      intronic chr1:39460455(+) A-I      intronic chr1:39461549(+) A-I      intronic chr1:39462263(+) A-I      intronic chr1:39461707(+) A-I      intronic chr1:39460742(+) A-I      intronic chr1:39462266(+) A-I      intronic chr1:39462020(+) A-I      intronic chr1:39458974(+) A-I      intronic chr1:39462009(+) A-I      intronic chr1:39461591(+) A-I      intronic chr1:39459235(+) A-I      intronic chr1:39459200(+) A-I      intronic chr1:39458966(+) A-I      intronic chr1:39462149(+) A-I      intronic chr1:39462483(+) A-I      intronic chr1:39461933(+) A-I      intronic chr1:39461652(+) A-I      intronic chr1:39467121(+) A-I      intronic chr1:39464337(+) A-I      intronic chr1:39461950(+) A-I      intronic chr1:39461817(+) A-I      intronic chr1:39459142(+) A-I      intronic chr1:39461528(+) A-I      intronic chr1:39460666(+) A-I      intronic chr1:39468308(+) A-I      intronic chr1:39461586(+) A-I      intronic chr1:39460420(+) A-I      intronic chr1:39459585(+) A-I      intronic chr1:39461555(+) A-I      intronic chr1:39460713(+) A-I      intronic chr1:39465598(+) A-I      intronic chr1:39462463(+) A-I      intronic chr1:39462018(+) A-I      intronic chr1:39460278(+) A-I      intronic chr1:39462453(+) A-I      intronic chr1:39466429(+) A-I      intronic chr1:39459183(+) A-I      intronic chr1:39459382(+) A-I      intronic chr1:39459136(+) A-I      intronic chr1:39467077(+) A-I      intronic chr1:39459036(+) A-I      intronic chr1:39467138(+) A-I      intronic chr1:39460542(+) A-I      intronic chr1:39459485(+) A-I      intronic chr1:39459488(+) A-I      intronic chr1:39460591(+) A-I      intronic chr1:39466204(+) A-I      intronic chr1:39464435(+) A-I      intronic chr1:39460528(+) A-I      intronic chr1:39459651(+) A-I      intronic chr1:39460205(+) A-I      intronic chr1:39458957(+) A-I      intronic chr1:39458948(+) A-I      intronic chr1:39462252(+) A-I      intronic chr1:39461485(+) A-I      intronic chr1:39461892(+) A-I      intronic chr1:39462288(+) A-I      intronic chr1:39459333(+) A-I      intronic chr1:39462282(+) A-I      intronic chr1:39466181(+) A-I      intronic chr1:39468239(+) A-I      intronic chr1:39466490(+) A-I      intronic chr1:39462032(+) A-I      intronic chr1:39468281(+) A-I      intronic chr1:39461592(+) A-I      intronic chr1:39459209(+) A-I      intronic chr1:39462331(+) A-I      intronic chr1:39462417(+) A-I      intronic chr1:39461870(+) A-I      intronic chr1:39460448(+) A-I      intronic chr1:39464400(+) A-I      intronic chr1:39460501(+) A-I      intronic chr1:39459260(+) A-I      intronic chr1:39459027(+) A-I      intronic chr1:39466511(+) A-I      intronic chr1:39461626(+) A-I      intronic chr1:39462276(+) A-I      intronic chr1:39461896(+) A-I      intronic chr1:39465712(+) A-I      intronic chr1:39459622(+) A-I      intronic chr1:39467212(+) A-I      intronic chr1:39461458(+) A-I      intronic chr1:39461559(+) A-I      intronic chr1:39459429(+) A-I      intronic chr1:39459584(+) A-I      intronic chr1:39459648(+) A-I      intronic chr1:39459024(+) A-I      intronic chr1:39462001(+) A-I      intronic chr1:39461947(+) A-I      intronic chr1:39459654(+) A-I      intronic chr1:39459004(+) A-I      intronic chr1:39462386(+) A-I      intronic chr1:39462484(+) A-I      intronic chr1:39461509(+) A-I      intronic chr1:39462408(+) A-I      intronic chr1:39460636(+) A-I      intronic chr1:39463250(+) A-I      intronic chr1:39462461(+) A-I      intronic chr1:39467510(+) A-I      intronic chr1:39461694(+) A-I      intronic chr1:39459566(+) A-I      intronic chr1:39461585(+) A-I      intronic chr1:39462383(+) A-I      intronic chr1:39459101(+) A-I      intronic chr1:39460765(+) A-I      intronic chr1:39459687(+) A-I      intronic chr1:39464503(+) A-I      intronic chr1:39459025(+) A-I      intronic chr1:39461932(+) A-I      intronic chr1:39464398(+) A-I      intronic chr1:39461627(+) A-I      intronic chr1:39467118(+) A-I      intronic chr1:39462111(+) A-I      intronic chr1:39461519(+) A-I      intronic chr1:39460252(+) A-I      intronic chr1:39462155(+) A-I      intronic chr1:39459010(+) A-I      intronic chr1:39461595(+) A-I      intronic chr1:39461518(+) A-I      intronic chr1:39468120(+) A-I      intronic chr1:39459349(+) A-I      intronic chr1:39466580(+) A-I      intronic chr1:39462302(+) A-I      intronic chr1:39462413(+) A-I      intronic chr1:39459686(+) A-I      intronic chr1:39460295(+) A-I      intronic chr1:39459603(+) A-I      intronic chr1:39461928(+) A-I      intronic chr1:39461449(+) A-I      intronic chr1:39461618(+) A-I      intronic chr1:39459591(+) A-I      intronic chr1:39462265(+) A-I      intronic chr1:39459595(+) A-I      intronic chr1:39459263(+) A-I      intronic chr1:39464458(+) A-I      intronic chr1:39462138(+) A-I      intronic chr1:39466553(+) A-I      intronic chr1:39460723(+) A-I      intronic chr1:39459091(+) A-I      intronic chr1:39459405(+) A-I      intronic chr1:39460527(+) A-I      intronic chr1:39466981(+) A-I      intronic chr1:39460688(+) A-I      intronic chr1:39461693(+) A-I      intronic chr1:39459356(+) A-I      intronic chr1:39462029(+) A-I      intronic chr1:39460725(+) A-I      intronic chr1:39459182(+) A-I      intronic chr1:39458965(+) A-I      intronic chr1:39466593(+) A-I      intronic chr1:39461547(+) A-I      intronic chr1:39468148(+) A-I      intronic chr1:39460203(+) A-I      intronic chr1:39461554(+) A-I      intronic chr1:39465753(+) A-I      intronic chr1:39459231(+) A-I      intronic chr1:39461906(+) A-I      intronic chr1:39459299(+) A-I      intronic chr1:39459080(+) A-I      intronic chr1:39461638(+) A-I      intronic chr1:39462341(+) A-I      intronic chr1:39461495(+) A-I      intronic chr1:39464392(+) A-I      intronic chr1:39462462(+) A-I      intronic chr1:39460317(+) A-I      intronic chr1:39461786(+) A-I      intronic chr1:39460242(+) A-I      intronic chr1:39459195(+) A-I      intronic chr1:39461871(+) A-I      intronic chr1:39459135(+) A-I      intronic chr1:39462019(+) A-I      intronic chr1:39468131(+) A-I      intronic chr1:39462400(+) A-I      intronic chr1:39461472(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	AKIRIN1	chr1:39462020(+) A-I intron -    22327324 chr1:39460420(+) A-I intron -    22028664 chr1:39460423(+) A-I intron -    22028664 chr1:39460426(+) A-I intron -    22028664 chr1:39460436(+) A-I intron -    22028664 chr1:39460448(+) A-I intron -    22028664 chr1:39460455(+) A-I intron -    22028664 chr1:39460527(+) A-I intron -    22028664 chr1:39460564(+) A-I intron -    22028664 chr1:39459025(+) A-I intron -    21960545 chr1:39461638(+) A-I intron -    21960545 chr1:39462408(+) A-I intron -    21960545 chr1:39458948(+) A-G intron -    22484847 chr1:39458957(+) A-G intron -    22484847 chr1:39459010(+) A-G intron -    22484847 chr1:39459036(+) A-G intron -    22484847 chr1:39459080(+) A-G intron -    22484847 chr1:39459235(+) A-G intron -    22484847 chr1:39459382(+) A-G intron -    22484847 chr1:39459595(+) A-G intron -    22484847 chr1:39459603(+) A-G intron -    22484847 chr1:39459622(+) A-G intron -    22484847 chr1:39459686(+) A-G intron -    22484847 chr1:39460420(+) A-G intron -    22484847 chr1:39460448(+) A-G intron -    22484847 chr1:39460527(+) A-G intron -    22484847 chr1:39460713(+) A-G intron -    22484847 chr1:39460723(+) A-G intron -    22484847 chr1:39461449(+) A-G intron -    22484847 chr1:39461458(+) A-G intron -    22484847 chr1:39461519(+) A-G intron -    22484847 chr1:39461528(+) A-G intron -    22484847 chr1:39461555(+) A-G intron -    22484847 chr1:39461556(+) A-G intron -    22484847 chr1:39461559(+) A-G intron -    22484847 chr1:39461586(+) A-G intron -    22484847 chr1:39461591(+) A-G intron -    22484847 chr1:39461595(+) A-G intron -    22484847 chr1:39461626(+) A-G intron -    22484847 chr1:39461637(+) T-C intron -    22484847 chr1:39461638(+) A-G intron -    22484847 chr1:39461798(+) A-G intron -    22484847 chr1:39461866(+) A-G intron -    22484847 chr1:39461870(+) A-G intron -    22484847 chr1:39461871(+) A-G intron -    22484847 chr1:39461892(+) A-G intron -    22484847 chr1:39461896(+) A-G intron -    22484847 chr1:39461906(+) A-G intron -    22484847 chr1:39461928(+) A-G intron -    22484847 chr1:39461947(+) A-G intron -    22484847 chr1:39461950(+) A-G intron -    22484847 chr1:39462018(+) A-G intron -    22484847 chr1:39462019(+) A-G intron -    22484847 chr1:39462020(+) A-G intron -    22484847 chr1:39462149(+) A-G intron -    22484847 chr1:39462266(+) A-G intron -    22484847 chr1:39462282(+) A-G intron -    22484847 chr1:39462288(+) A-G intron -    22484847 chr1:39462302(+) A-G intron -    22484847 chr1:39462331(+) A-G intron -    22484847 chr1:39462341(+) A-G intron -    22484847 chr1:39462383(+) A-G intron -    22484847 chr1:39462408(+) A-G intron -    22484847 chr1:39462413(+) A-G intron -    22484847 chr1:39462417(+) A-G intron -    22484847 chr1:39462453(+) A-G intron -    22484847 chr1:39462463(+) A-G intron -    22484847 chr1:39468239(+) A-G intron -    22484847 chr1:39468308(+) A-G intron -    22484847 chr1:39470869(+) G-A intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	AKIRIN1	chr1:39469835-39469836(+) m6A 3'UTR       24284625//24981863//22608085 chr1:39469878-39469879(+) m6A 3'UTR       24284625//24981863//22608085 chr1:39469886-39469887(+) m6A 3'UTR       24284625//24981863//22608085 chr1:39469934-39469935(+) m6A 3'UTR       24284625//24981863//22608085 chr1:39469966-39469967(+) m6A 3'UTR       24284625//24981863//22608085 chr1:39470182-39470183(+) m6A 3'UTR       27773535 chr1:39470278-39470279(+) m6A 3'UTR       27773535 chr1:39470319-39470320(+) m6A 3'UTR       27773535 chr1:39470373-39470374(+) m6A 3'UTR       24981863//27773535 chr1:39470393-39470394(+) m6A 3'UTR       24981863//27773535 chr1:39470423-39470424(+) m6A 3'UTR       24981863//27773535 chr1:39470801-39470802(+) m6A 3'UTR       24209618 chr1:39471379-39471380(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	AKIRIN1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H20
Interactor2: AKIRIN1

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg