Basic Information:

  VIRBase ID:  

VHID00186402

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H20:  MIMAT0014702          FANCM:  NM_001308133     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H20	FANCM
miRBase Accession/Entrez ID	MIMAT0014702	57697
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	FAAP250//KIAA1596//POF15//SPGF28

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FANCM	chr14:45648948(+) A-I      intronic chr14:45610854(+) A-I      intronic chr14:45648959(+) A-I      intronic chr14:45646857(+) A-I      intronic chr14:45610380(+) A-I      intronic chr14:45610384(+) A-I      intronic chr14:45611603(+) A-I      intronic chr14:45610897(+) A-I      intronic chr14:45635551(+) A-I      intronic chr14:45661766(+) A-I      intronic chr14:45613147(+) A-I      intronic chr14:45613142(+) A-I      intronic chr14:45612658(+) A-I      intronic chr14:45612559(+) A-I      intronic chr14:45612509(+) A-I      intronic chr14:45616893(+) A-I      intronic chr14:45612396(+) A-I      intronic chr14:45616024(+) A-I      intronic chr14:45610364(+) A-I      intronic chr14:45635602(+) A-I      intronic chr14:45659060(+) A-I      intronic chr14:45654094(+) A-I      intronic chr14:45654077(+) A-I      intronic chr14:45654046(+) A-I      intronic chr14:45617279(+) A-I      intronic chr14:45654038(+) A-I      intronic chr14:45616023(+) A-I      intronic chr14:45617280(+) A-I      intronic chr14:45617306(+) A-I      intronic chr14:45620908(+) A-I      intronic chr14:45621306(+) A-I      intronic chr14:45621311(+) A-I      intronic chr14:45621517(+) A-I      intronic chr14:45623497(+) A-I      intronic chr14:45661934(+) A-I      intronic chr14:45623502(+) A-I      intronic chr14:45653729(+) A-I      intronic chr14:45653718(+) A-I      intronic chr14:45649848(+) A-I      intronic chr14:45649802(+) A-I      intronic chr14:45649754(+) A-I      intronic chr14:45649714(+) A-I      intronic chr14:45654132(+) A-I      intronic chr14:45654116(+) A-I      intronic chr14:45617198(+) A-I      intronic chr14:45611701(+) A-I      intronic chr14:45649713(+) A-I      intronic chr14:45609982(+) A-I      intronic chr14:45639654(+) A-I      intronic chr14:45610929(+) A-I      intronic chr14:45649689(+) A-I      intronic chr14:45612619(+) A-I      intronic chr14:45616566(+) A-I      intronic chr14:45616020(+) A-I      intronic chr14:45648894(+) A-I      intronic chr14:45615818(+) A-I      intronic chr14:45621062(+) A-I      intronic chr14:45648865(+) A-I      intronic chr14:45648826(+) A-I      intronic chr14:45648287(+) A-I      intronic chr14:45609179(+) A-I      intronic chr14:45635415(+) A-I      intronic chr14:45635880(+) A-I      intronic chr14:45648281(+) A-I      intronic chr14:45648138(+) A-I      intronic chr14:45643443(+) A-I      intronic chr14:45649750(+) A-I      intronic chr14:45639520(+) A-I      intronic chr14:45639504(+) A-I      intronic chr14:45635936(+) A-I      intronic chr14:45635852(+) A-I      intronic chr14:45617139(+) A-I      intronic chr14:45610344(+) A-I      intronic chr14:45635711(+) A-I      intronic chr14:45635429(+) A-I      intronic chr14:45633278(+) A-I      intronic chr14:45633217(+) A-I      intronic chr14:45639602(+) A-I      intronic chr14:45639575(+) A-I      intronic chr14:45624923(+) A-I      intronic chr14:45616900(+) A-I      intronic chr14:45610337(+) A-I      intronic chr14:45615414(+) A-I      intronic chr14:45610167(+) A-I      intronic chr14:45610334(+) A-I      intronic chr14:45615399(+) A-I      intronic chr14:45610092(+) A-I      intronic chr14:45615376(+) A-I      intronic chr14:45610892(+) A-I      intronic chr14:45610090(+) A-I      intronic chr14:45610162(+) A-I      intronic chr14:45610328(+) A-I      intronic chr14:45611566(+) A-I      intronic chr14:45615297(+) A-I      intronic chr14:45616895(+) A-I      intronic chr14:45660197(+) A-I      intronic chr14:45660188(+) A-I      intronic chr14:45616695(+) A-I      intronic chr14:45635832(+) A-I      intronic chr14:45616669(+) A-I      intronic chr14:45615287(+) A-I      intronic chr14:45661767(+) A-I      intronic chr14:45613169(+) A-I      intronic chr14:45624882(+) A-I      intronic chr14:45654190(+) A-I      intronic chr14:45624914(+) A-I      intronic chr14:45612482(+) A-I      intronic chr14:45616706(+) A-I      intronic chr14:45624922(+) A-I      intronic chr14:45648218(+) A-I      intronic chr14:45621312(+) A-I      intronic chr14:45649753(+) A-I      intronic chr14:45616841(+) A-I      intronic chr14:45635782(+) A-I      intronic chr14:45611610(+) A-I      intronic chr14:45611691(+) A-I      intronic chr14:45609456(+) A-I      intronic chr14:45621332(+) A-I      intronic chr14:45609972(+) A-I      intronic chr14:45635544(+) A-I      intronic chr14:45610976(+) A-I      intronic chr14:45635763(+) A-I      intronic chr14:45610236(+) A-I      intronic chr14:45610411(+) A-I      intronic chr14:45659103(+) A-I      intronic chr14:45610973(+) A-I      intronic chr14:45660113(+) A-I      intronic chr14:45659042(+) A-I      intronic chr14:45616621(+) A-I      intronic chr14:45610993(+) A-I      intronic chr14:45612445(+) A-I      intronic chr14:45653754(+) A-I      intronic chr14:45610072(+) A-I      intronic chr14:45614866(+) A-I      intronic chr14:45609449(+) A-I      intronic chr14:45618845(+) A-I      intronic chr14:45612627(+) A-I      intronic chr14:45610329(+) A-I      intronic chr14:45608925(+) A-I      intronic chr14:45611584(+) A-I      intronic chr14:45648967(+) A-I      intronic chr14:45635452(+) A-I      intronic chr14:45610932(+) A-I      intronic chr14:45649874(+) A-I      intronic chr14:45635728(+) A-I      intronic chr14:45610258(+) A-I      intronic chr14:45661933(+) A-I      intronic chr14:45664135(+) A-I      intronic chr14:45624747(+) A-I      intronic chr14:45635476(+) A-I      intronic chr14:45609988(+) A-I      intronic chr14:45610144(+) A-I      intronic chr14:45660183(+) A-I      intronic chr14:45610121(+) A-I      intronic chr14:45617215(+) A-I      intronic chr14:45653793(+) A-I      intronic chr14:45611649(+) A-I      intronic chr14:45624754(+) A-I      intronic chr14:45649859(+) A-I      intronic chr14:45609466(+) A-I      intronic chr14:45659077(+) A-I      intronic chr14:45635414(+) A-I      intronic chr14:45610370(+) A-I      intronic chr14:45648259(+) A-I      intronic chr14:45615365(+) A-I      intronic chr14:45610922(+) A-I      intronic chr14:45617040(+) A-I      intronic chr14:45635907(+) A-I      intronic chr14:45609966(+) A-I      intronic chr14:45639650(+) A-I      intronic chr14:45610313(+) A-I      intronic chr14:45617177(+) A-I      intronic chr14:45639515(+) A-I      intronic chr14:45631403(+) A-I      intronic chr14:45610259(+) A-I      intronic chr14:45649669(+) A-I      intronic chr14:45653777(+) A-I      intronic chr14:45648147(+) A-I      intronic chr14:45653814(+) A-I      intronic chr14:45610038(+) A-I      intronic chr14:45616842(+) A-I      intronic chr14:45635845(+) A-I      intronic chr14:45610376(+) A-I      intronic chr14:45661796(+) A-I      intronic chr14:45639668(+) A-I      intronic chr14:45639649(+) A-I      intronic chr14:45613036(+) A-I      intronic chr14:45609541(+) A-I      intronic chr14:45634497(+) A-I      intronic chr14:45649698(+) A-I      intronic chr14:45621467(+) A-I      intronic chr14:45610314(+) A-I      intronic chr14:45610152(+) A-I      intronic chr14:45610958(+) A-I      intronic chr14:45649749(+) A-I      intronic chr14:45616855(+) A-I      intronic chr14:45609061(+) A-I      intronic chr14:45654106(+) A-I      intronic chr14:45610893(+) A-I      intronic chr14:45648385(+) A-I      intronic chr14:45617146(+) A-I      intronic chr14:45609994(+) A-I      intronic chr14:45661921(+) A-I      intronic chr14:45617385(+) A-I      intronic chr14:45609544(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FANCM	chr14:45659042(+) A-I intron -    22327324 chr14:45660183(+) A-I intron -    22327324 chr14:45608925(+) A-G intron -    22484847 chr14:45609966(+) A-G intron -    22484847 chr14:45610329(+) A-G intron -    22484847 chr14:45649887(+) C-A intron -    22484847 chr14:45659042(+) A-G intron -    22484847 chr14:45660183(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FANCM	chr14:45605153-45605154(+) m6A 5'UTR       24981863//22608085 chr14:45605169-45605170(+) m6A 5'UTR       24981863//22608085 chr14:45605297-45605298(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:45605318-45605319(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:45605511-45605512(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:45605575-45605576(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:45605585-45605586(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr14:45605665-45605666(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr14:45644415-45644416(+) m6A CDS       24981863//27773535//22608085 chr14:45644479-45644480(+) m6A CDS       24981863//27773535//22608085 chr14:45644494-45644495(+) m6A CDS       24981863//27773535//22608085 chr14:45644634-45644635(+) m6A CDS       24981863//22608085 chr14:45644654-45644655(+) m6A CDS       24981863//22608085 chr14:45644713-45644714(+) m6A CDS       24981863//22608085 chr14:45644870-45644871(+) m6A CDS       22608085 chr14:45644965-45644966(+) m6A CDS       24981863//22608085 chr14:45644973-45644974(+) m6A CDS       24981863//22608085 chr14:45645217-45645218(+) m6A CDS       24981863//22608085 chr14:45645297-45645298(+) m6A CDS       24981863//22608085 chr14:45645414-45645415(+) m6A CDS       24284625//24981863//22608085 chr14:45645444-45645445(+) m6A CDS       24284625//24981863//22608085 chr14:45645449-45645450(+) m6A CDS       24284625//24981863//22608085 chr14:45645499-45645500(+) m6A CDS       24284625//24209618//24981863//22608085 chr14:45645510-45645511(+) m6A CDS       24284625//24209618//24981863//22608085 chr14:45645523-45645524(+) m6A CDS       24284625//24209618//24981863//22608085 chr14:45645697-45645698(+) m6A CDS       24981863//22608085 chr14:45645718-45645719(+) m6A CDS       24981863//22608085 chr14:45645833-45645834(+) m6A CDS       24981863//22608085 chr14:45645990-45645991(+) m6A CDS       24981863//22608085 chr14:45645999-45646000(+) m6A CDS       24981863//22608085 chr14:45646034-45646035(+) m6A CDS       22608085 chr14:45646062-45646063(+) m6A CDS       22608085 chr14:45657060-45657061(+) m6A CDS       22608085 chr14:45657070-45657071(+) m6A CDS       22608085 chr14:45657076-45657077(+) m6A CDS       22608085 chr14:45658012-45658013(+) m6A CDS       22608085 chr14:45658022-45658023(+) m6A CDS       22608085 chr14:45658151-45658152(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr14:45658186-45658187(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr14:45658257-45658258(+) m6A CDS       24284625//24981863//22608085 chr14:45658317-45658318(+) m6A CDS       24284625//24981863//22608085 chr14:45658329-45658330(+) m6A CDS       24284625//24981863//22608085 chr14:45658420-45658421(+) m6A CDS       24284625//24981863//22608085 chr14:45658464-45658465(+) m6A CDS       24284625//24981863//27773535//22608085 chr14:45658471-45658472(+) m6A CDS       24284625//24981863//27773535//22608085 chr14:45658536-45658537(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085 chr14:45664691-45664692(+) m6A CDS//intron       24284625//24981863//22575960//22608085 chr14:45665430-45665431(+) m6A CDS       24981863//22608085 chr14:45665446-45665447(+) m6A CDS       24981863//22608085 chr14:45665463-45665464(+) m6A CDS       24981863//22608085 chr14:45665485-45665486(+) m6A CDS       24981863//22608085 chr14:45667849-45667850(+) m6A CDS//exon//intron       22608085 chr14:45667872-45667873(+) m6A CDS//exon//intron       22608085 chr14:45667950-45667951(+) m6A CDS//exon       24209618//24981863//22608085 chr14:45667970-45667971(+) m6A 3'UTR//CDS//exon       24209618//24981863//22608085 chr14:45667985-45667986(+) m6A 3'UTR//CDS//exon       24209618//24981863//22608085 chr14:45669192-45669193(+) m6A 3'UTR//CDS       24981863//22608085 chr14:45669240-45669241(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FANCM	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H20
Interactor2: FANCM

Evidence Support:

Prediction-Evidence	cRep//Targetscan
Support Database	RepTar//VmiReg