Basic Information:

  VIRBase ID:  

VHID00186391

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H20:  MIMAT0014702          SHROOM3:  NM_020859     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H20	SHROOM3
miRBase Accession/Entrez ID	MIMAT0014702	57619
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	APXL3//MSTP013//SHRM//ShrmL

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	SHROOM3	chr4:77564208(+) A-I      intronic chr4:77564210(+) A-I      intronic chr4:77643151(+) A-I      intronic chr4:77693457(+) A-I      intronic chr4:77652889(+) A-I      intronic chr4:77692424(+) A-I      intronic chr4:77692317(+) A-I      intronic chr4:77692240(+) A-I      intronic chr4:77691243(+) A-I      intronic chr4:77691238(+) A-I      intronic chr4:77527328(+) A-I      intronic chr4:77554662(+) A-I      intronic chr4:77554658(+) A-I      intronic chr4:77667088(+) A-I      intronic chr4:77540221(+) A-I      intronic chr4:77540200(+) A-I      intronic chr4:77540198(+) A-I      intronic chr4:77527347(+) A-I      intronic chr4:77696823(+) A-I      intronic chr4:77696813(+) A-I      intronic chr4:77696812(+) A-I      intronic chr4:77696809(+) A-I      intronic chr4:77696799(+) A-I      intronic chr4:77395396(+) A-I      intronic chr4:77395367(+) A-I      intronic chr4:77395365(+) A-I      intronic chr4:77395356(+) A-I      intronic chr4:77395355(+) A-I      intronic chr4:77541095(+) A-I      intronic chr4:77382176(+) A-I      intronic chr4:77390295(+) A-I      intronic chr4:77390299(+) A-I      intronic chr4:77394579(+) A-I      intronic chr4:77414946(+) A-I      intronic chr4:77519361(+) A-I      intronic chr4:77522737(+) A-I      intronic chr4:77554657(+) A-I      intronic chr4:77554652(+) A-I      intronic chr4:77554650(+) A-I      intronic chr4:77541063(+) A-I      intronic chr4:77541062(+) A-I      intronic chr4:77667066(+) A-I      intronic chr4:77541111(+) A-I      intronic chr4:77541226(+) A-I      intronic chr4:77554365(+) A-I      intronic chr4:77554716(+) A-I      intronic chr4:77525065(+) A-I      intronic chr4:77564089(+) A-I      intronic chr4:77582482(+) A-I      intronic chr4:77541136(+) A-I      intronic chr4:77541072(+) A-I      intronic chr4:77596898(+) A-I      intronic chr4:77564259(+) A-I      intronic chr4:77524333(+) A-I      intronic chr4:77541165(+) A-I      intronic chr4:77554731(+) A-I      intronic chr4:77655695(+) A-I      intronic chr4:77524370(+) A-I      intronic chr4:77379042(+) A-I      intronic chr4:77450685(+) A-I      intronic chr4:77642246(+) A-I      intronic chr4:77541064(+) A-I      intronic chr4:77539346(+) A-I      intronic chr4:77486748(+) A-I      intronic chr4:77591852(+) A-I      intronic chr4:77450660(+) A-I      intronic chr4:77564312(+) A-I      intronic chr4:77554405(+) A-I      intronic chr4:77524410(+) A-I      intronic chr4:77540055(+) A-I      intronic chr4:77472091(+) A-I      intronic chr4:77574902(+) A-I      intronic chr4:77641898(+) A-I      intronic chr4:77458145(+) A-I      intronic chr4:77607247(+) A-I      intronic chr4:77486819(+) A-I      intronic chr4:77393989(+) A-I      intronic chr4:77575606(+) A-I      intronic chr4:77564223(+) A-I      intronic chr4:77554474(+) A-I      intronic chr4:77554247(+) A-I      intronic chr4:77554688(+) A-I      intronic chr4:77541029(+) A-I      intronic chr4:77487172(+) A-I      intronic chr4:77541065(+) A-I      intronic chr4:77596888(+) A-I      intronic chr4:77461263(+) A-I      intronic chr4:77668233(+) A-I      intronic chr4:77393987(+) A-I      intronic chr4:77394659(+) A-I      intronic chr4:77666956(+) A-I      intronic chr4:77486765(+) A-I      intronic chr4:77554689(+) A-I      intronic chr4:77588492(+) A-I      intronic chr4:77366170(+) A-I      intronic chr4:77540237(+) A-I      intronic chr4:77550199(+) A-I      intronic chr4:77554285(+) A-I      intronic chr4:77541130(+) A-I      intronic chr4:77486677(+) A-I      intronic chr4:77434560(+) A-I      intronic chr4:77486670(+) A-I      intronic chr4:77541179(+) A-I      intronic chr4:77448680(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	SHROOM3	chr4:77486765(+) A-I intron -    15342557 chr4:77486819(+) A-I intron -    15342557 chr4:77487142(+) A-I intron -    15342557 chr4:77487157(+) A-I intron -    15342557 chr4:77487169(+) A-I intron -    15342557 chr4:77487172(+) A-I intron -    15342557 chr4:77550045(+) A-I intron -    15258596 chr4:77550120(+) A-I intron -    15258596 chr4:77550121(+) A-I intron -    15258596 chr4:77550123(+) A-I intron -    15258596 chr4:77496752(+) A-I intron -    21960545 chr4:77524356(+) A-I intron -    21960545 chr4:77524421(+) A-I intron -    21960545 chr4:77550094(+) A-I intron -    21960545 chr4:77554247(+) A-I intron -    21960545 chr4:77568928(+) A-I intron -    21960545 chr4:77583929(+) A-I intron -    21960545 chr4:77586030(+) A-I intron -    21960545 chr4:77588551(+) A-I intron -    21960545 chr4:77588609(+) A-I intron -    21960545 chr4:77589579(+) A-I intron -    21960545 chr4:77591944(+) A-I intron -    21960545 chr4:77593048(+) A-I intron -    21960545 chr4:77593146(+) A-I intron -    21960545 chr4:77593867(+) A-I intron -    21960545 chr4:77596801(+) A-I intron -    21960545 chr4:77676784(+) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	SHROOM3	chr4:77357124-77357125(+) m6A 5'UTR       - chr4:77357214-77357215(+) m6A CDS       25456834 chr4:77357224-77357225(+) m6A CDS       25456834 chr4:77357251-77357252(+) m6A CDS       - chr4:77631368-77631369(+) m6A CDS//exon       24284625 chr4:77631422-77631423(+) m6A CDS//exon       24284625 chr4:77660095-77660096(+) m6A CDS//exon//intron       24284625 chr4:77660185-77660186(+) m6A CDS//exon//intron       24284625//25456834//24981863//22575960//22608085 chr4:77660250-77660251(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr4:77660296-77660297(+) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr4:77660436-77660437(+) m6A CDS//exon//intron       24284625//25456834//24981863//22575960//22608085 chr4:77660446-77660447(+) m6A CDS//exon//intron       24284625//25456834//24981863//22575960//22608085 chr4:77660578-77660579(+) m6A CDS//exon//intron       24284625//22608085 chr4:77660650-77660651(+) m6A CDS//exon//intron       24284625 chr4:77660881-77660882(+) m6A CDS//exon//intron       24284625 chr4:77660930-77660931(+) m6A CDS//exon//intron       24284625//22608085 chr4:77660960-77660961(+) m6A CDS//exon//intron       24284625//24981863//22608085 chr4:77661044-77661045(+) m6A CDS//exon//intron       24284625//24981863 chr4:77661110-77661111(+) m6A CDS//exon//intron       24284625//24981863 chr4:77661172-77661173(+) m6A CDS//exon//intron       24284625 chr4:77661223-77661224(+) m6A CDS//exon//intron       24284625 chr4:77661297-77661298(+) m6A CDS//exon//intron       24284625 chr4:77661325-77661326(+) m6A CDS//exon//intron       24284625 chr4:77661347-77661348(+) m6A CDS//exon//intron       24284625 chr4:77661375-77661376(+) m6A CDS//exon//intron       24284625//22608085 chr4:77661433-77661434(+) m6A CDS//exon//intron       24284625//25456834//22608085 chr4:77661475-77661476(+) m6A CDS//exon//intron       24284625//25456834//22608085 chr4:77661510-77661511(+) m6A CDS//exon//intron       24284625//25456834//22608085 chr4:77661541-77661542(+) m6A CDS//exon//intron       24284625//25456834//22608085 chr4:77661716-77661717(+) m6A CDS//exon//intron       24284625//24981863//22575960//22608085 chr4:77661765-77661766(+) m6A CDS//exon//intron       24284625//24981863//22575960//22608085 chr4:77661807-77661808(+) m6A CDS//exon//intron       24284625//25456834//24981863//22575960//22608085 chr4:77661842-77661843(+) m6A CDS//exon//intron       24284625//25456834//24981863//22575960//22608085 chr4:77661943-77661944(+) m6A CDS//exon//intron       24284625//25456834//24981863//22575960//22608085 chr4:77662042-77662043(+) m6A CDS//exon//intron       24284625//25456834//22608085 chr4:77662102-77662103(+) m6A CDS//exon//intron       24284625//25456834//22608085 chr4:77662159-77662160(+) m6A CDS//exon//intron       24284625//25456834//22608085 chr4:77662433-77662434(+) m6A CDS//exon//intron       24284625 chr4:77662588-77662589(+) m6A CDS//exon//intron       24284625//24981863 chr4:77662605-77662606(+) m6A CDS//exon//intron       24284625//24981863 chr4:77662812-77662813(+) m6A CDS//exon//intron       25456834 chr4:77662885-77662886(+) m6A CDS//exon//intron       24284625//25456834//22608085 chr4:77662911-77662912(+) m6A CDS//exon//intron       24284625//25456834//22608085 chr4:77662938-77662939(+) m6A CDS//exon//intron       24284625//25456834//22608085 chr4:77662996-77662997(+) m6A CDS//exon//intron       24284625//25456834//22608085 chr4:77663068-77663069(+) m6A CDS//exon//intron       24284625//25456834//22608085 chr4:77663109-77663110(+) m6A exon//intron       24284625//25456834//22608085 chr4:77675590-77675591(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr4:77675597-77675598(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr4:77675620-77675621(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr4:77675669-77675670(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr4:77675752-77675753(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085 chr4:77675954-77675955(+) m6A CDS       24284625//25456834//24981863 chr4:77675993-77675994(+) m6A CDS       24284625//25456834//24981863 chr4:77676012-77676013(+) m6A CDS       24284625//25456834//24981863 chr4:77676053-77676054(+) m6A CDS       24284625//24981863//22608085 chr4:77676122-77676123(+) m6A CDS       24284625//24981863 chr4:77676207-77676208(+) m6A CDS       24284625//24981863 chr4:77676247-77676248(+) m6A CDS       24284625//24981863//22608085 chr4:77676314-77676315(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77677610-77677611(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77677677-77677678(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77677691-77677692(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77677698-77677699(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77677800-77677801(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77677833-77677834(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77677885-77677886(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77677893-77677894(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77677927-77677928(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77677942-77677943(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77677957-77677958(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77677971-77677972(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77677981-77677982(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77678014-77678015(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77678029-77678030(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77678058-77678059(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77680705-77680706(+) m6A CDS       24284625//24981863//22608085 chr4:77680780-77680781(+) m6A CDS       24981863 chr4:77680823-77680824(+) m6A CDS       24981863 chr4:77691814-77691815(+) m6A CDS       24981863 chr4:77691848-77691849(+) m6A CDS       - chr4:77700028-77700029(+) m6A CDS       24284625 chr4:77700097-77700098(+) m6A CDS       24284625 chr4:77700253-77700254(+) m6A CDS       24284625//25456834//24981863//22608085 chr4:77700405-77700406(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr4:77700417-77700418(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr4:77700533-77700534(+) m6A 3'UTR       24284625//24981863//22608085 chr4:77700583-77700584(+) m6A 3'UTR       24284625//24981863//22608085 chr4:77700590-77700591(+) m6A 3'UTR       24284625//24981863//22608085 chr4:77700765-77700766(+) m6A 3'UTR       24981863 chr4:77700780-77700781(+) m6A 3'UTR       24981863 chr4:77700788-77700789(+) m6A 3'UTR       24981863 chr4:77700795-77700796(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	SHROOM3	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H20
Interactor2: SHROOM3

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg