Basic Information:

  VIRBase ID:  

VHID00186241

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H20:  MIMAT0014702          LRRC1:  NM_018214     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H20	LRRC1
miRBase Accession/Entrez ID	MIMAT0014702	55227
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	dJ523E19.1//LANO

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LRRC1	chr6:53722982(+) A-I      intronic chr6:53724705(+) A-I      intronic chr6:53766091(+) A-I      intronic chr6:53733164(+) A-I      intronic chr6:53744223(+) A-I      intronic chr6:53766098(+) A-I      intronic chr6:53733168(+) A-I      intronic chr6:53714694(+) A-I      intronic chr6:53759922(+) A-I      intronic chr6:53732626(+) A-I      intronic chr6:53770060(+) A-I      intronic chr6:53732701(+) A-I      intronic chr6:53738387(+) A-I      intronic chr6:53732511(+) A-I      intronic chr6:53746892(+) A-I      intronic chr6:53756634(+) A-I      intronic chr6:53746990(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LRRC1	chr6:53659629-53659630(+) m6A 5'UTR       25456834 chr6:53659970-53659971(+) m6A 5'UTR       24209618//25456834//24981863//22608085 chr6:53660026-53660027(+) m6A 5'UTR       24209618//25456834//24981863 chr6:53785548-53785549(+) m6A CDS       24209618//25456834//24981863//27773535//22608085 chr6:53787435-53787436(+) m6A CDS       24209618//25456834//24981863//27773535//22608085 chr6:53787489-53787490(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr6:53787530-53787531(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr6:53787535-53787536(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr6:53787541-53787542(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22608085 chr6:53788463-53788464(+) m6A 3'UTR       27773535 chr6:53788517-53788518(+) m6A 3'UTR       27773535 chr6:53788530-53788531(+) m6A 3'UTR       27773535 chr6:53788542-53788543(+) m6A 3'UTR       27773535 chr6:53788568-53788569(+) m6A 3'UTR       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LRRC1	Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H20
Interactor2: LRRC1

Evidence Support:

Prediction-Evidence	cRep//miRanda//Targetscan
Support Database	RepTar//VmiReg