Basic Information:

  VIRBase ID:  

VHID00185981

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2483

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H20:  MIMAT0014702          LDLRAP1:  NM_015627     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H20	LDLRAP1
miRBase Accession/Entrez ID	MIMAT0014702	26119
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ARH//ARH1//ARH2//FHCB1//FHCB2//FHCL4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LDLRAP1	chr1:25884826(+) A-I      intronic chr1:25870766(+) A-I      intronic chr1:25873759(+) A-I      intronic chr1:25875167(+) A-I      intronic chr1:25875288(+) A-I      intronic chr1:25875188(+) A-I      intronic chr1:25875251(+) A-I      intronic chr1:25874897(+) A-I      intronic chr1:25875171(+) A-I      intronic chr1:25875201(+) A-I      intronic chr1:25874925(+) A-I      intronic chr1:25875385(+) A-I      intronic chr1:25873754(+) A-I      intronic chr1:25875356(+) A-I      intronic chr1:25872863(+) A-I      intronic chr1:25873854(+) A-I      intronic chr1:25873845(+) A-I      intronic chr1:25875244(+) A-I      intronic chr1:25875075(+) A-I      intronic chr1:25874919(+) A-I      intronic chr1:25874956(+) A-I      intronic chr1:25875382(+) A-I      intronic chr1:25873803(+) A-I      intronic chr1:25875189(+) A-I      intronic chr1:25875196(+) A-I      intronic chr1:25884071(+) A-I      intronic chr1:25875216(+) A-I      intronic chr1:25873853(+) A-I      intronic chr1:25874978(+) A-I      intronic chr1:25875330(+) A-I      intronic chr1:25888106(+) A-I      intronic chr1:25875285(+) A-I      intronic chr1:25873616(+) A-I      intronic chr1:25875024(+) A-I      intronic chr1:25874939(+) A-I      intronic chr1:25874968(+) A-I      intronic chr1:25875307(+) A-I      intronic chr1:25875291(+) A-I      intronic chr1:25875281(+) A-I      intronic chr1:25875234(+) A-I      intronic chr1:25875337(+) A-I      intronic chr1:25888100(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	LDLRAP1	chr1:25894468(+) C-G intron -    21725310

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LDLRAP1	chr1:25876457-25876458(+) m6A exon//intron       - chr1:25876513-25876514(+) m6A exon//intron       - chr1:25879882-25879883(+) m6A exon//intron       - chr1:25880424-25880425(+) m6A CDS//exon       24209618 chr1:25880429-25880430(+) m6A CDS//exon       24209618 chr1:25881368-25881369(+) m1A CDS//exon       26863196 chr1:25881420-25881421(+) m6A CDS//exon       24209618 chr1:25883663-25883664(+) m6A CDS//exon       24209618 chr1:25883783-25883784(+) m6A exon//intron       - chr1:25889620-25889621(+) m6A CDS//exon       24284625 chr1:25890166-25890167(+) m6A CDS//exon       24284625 chr1:25890175-25890176(+) m6A CDS//exon       24284625 chr1:25890186-25890187(+) m6A CDS//exon       24284625 chr1:25893354-25893355(+) m6A CDS//exon       24284625//24209618 chr1:25893373-25893374(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:25893394-25893395(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:25893433-25893434(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:25893501-25893502(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:25893527-25893528(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:25893673-25893674(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr1:25893831-25893832(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:25893873-25893874(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:25894035-25894036(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:25894052-25894053(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22575960//22608085 chr1:25894226-25894227(+) m6A 3'UTR//exon       24284625//24209618//25456834//22575960//22608085 chr1:25894259-25894260(+) m6A 3'UTR//exon       24284625//24209618//25456834 chr1:25894411-25894412(+) m6A 3'UTR//exon       24284625 chr1:25894643-25894644(+) m6A 3'UTR//exon       - chr1:25894668-25894669(+) m6A 3'UTR//exon       - chr1:25894759-25894760(+) m6A 3'UTR//exon       24284625 chr1:25894822-25894823(+) m6A 3'UTR//exon       24284625//24981863 chr1:25894989-25894990(+) m6A 3'UTR//exon       - chr1:25895006-25895007(+) m6A 3'UTR//exon       - chr1:25895029-25895030(+) m6A 3'UTR//exon       - chr1:25895085-25895086(+) m6A 3'UTR//exon       24284625

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LDLRAP1	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H20
Interactor2: LDLRAP1

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Rep//Targetscan
Support Database	RepTar//VmiReg