Basic Information:

  VIRBase ID:  

VHID00185574

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H20:  MIMAT0014702          ARHGAP29:  NM_001328665     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H20	ARHGAP29
miRBase Accession/Entrez ID	MIMAT0014702	9411
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	PARG1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ARHGAP29	chr1:94702985(-) A-I      5'UTR chr1:94672290(-) A-I      intronic chr1:94673626(-) A-I      intronic chr1:94673621(-) A-I      intronic chr1:94673613(-) A-I      intronic chr1:94672768(-) A-I      intronic chr1:94672236(-) A-I      intronic chr1:94674140(-) A-I      intronic chr1:94673813(-) A-I      intronic chr1:94673811(-) A-I      intronic chr1:94673631(-) A-I      intronic chr1:94672249(-) A-I      intronic chr1:94672654(-) A-I      intronic chr1:94672758(-) A-I      intronic chr1:94672447(-) A-I      intronic chr1:94688881(-) A-I      intronic chr1:94672196(-) A-I      intronic chr1:94672376(-) A-I      intronic chr1:94672814(-) A-I      intronic chr1:94672352(-) A-I      intronic chr1:94673753(-) A-I      intronic chr1:94672703(-) A-I      intronic chr1:94677783(-) A-I      intronic chr1:94672802(-) A-I      intronic chr1:94683043(-) A-I      intronic chr1:94673669(-) A-I      intronic chr1:94663789(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARHGAP29	chr1:94637339-94637340(-) m6A 3'UTR//intron       27773535 chr1:94637397-94637398(-) m6A 3'UTR//intron       27773535 chr1:94637418-94637419(-) m6A 3'UTR//intron       27773535 chr1:94637442-94637443(-) m6A 3'UTR//intron       27773535 chr1:94639323-94639324(-) m6A 3'UTR//intron       24209618//27773535 chr1:94639455-94639456(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22608085 chr1:94639487-94639488(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr1:94639533-94639534(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr1:94639581-94639582(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr1:94639587-94639588(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085 chr1:94639706-94639707(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:94639720-94639721(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:94639741-94639742(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:94639863-94639864(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:94639930-94639931(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:94639947-94639948(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:94639952-94639953(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:94639965-94639966(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:94639984-94639985(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:94640076-94640077(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:94640138-94640139(-) m6A CDS//intron       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr1:94640162-94640163(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr1:94640173-94640174(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr1:94640199-94640200(-) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr1:94640239-94640240(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr1:94640283-94640284(-) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr1:94642191-94642192(-) m6A exon//intron       27773535//22608085 chr1:94643662-94643663(-) m6A CDS//exon       27773535 chr1:94643681-94643682(-) m6A CDS//exon       27773535 chr1:94643690-94643691(-) m6A CDS//exon       27773535 chr1:94643699-94643700(-) m6A CDS//exon       27773535 chr1:94645336-94645337(-) m6A CDS//exon       27773535 chr1:94645346-94645347(-) m6A CDS//exon       24981863//27773535 chr1:94645370-94645371(-) m6A CDS//exon       24981863//27773535 chr1:94645403-94645404(-) m6A CDS//exon       24981863 chr1:94645425-94645426(-) m6A CDS//exon       24981863 chr1:94667310-94667311(-) m6A CDS       27773535 chr1:94667395-94667396(-) m6A CDS       24981863//27773535 chr1:94667520-94667521(-) m6A 3'UTR//intron       24981863//27773535 chr1:94668491-94668492(-) m6A CDS       24981863 chr1:94668521-94668522(-) m6A CDS       24981863 chr1:94668690-94668691(-) m6A CDS       24981863 chr1:94697152-94697153(-) m6A CDS       24209618

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ARHGAP29	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HeLa-S3 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H20
Interactor2: ARHGAP29

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg