Basic Information:

  VIRBase ID:  

VHID00185516

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H20:  MIMAT0014702          VAMP4:  NR_033704     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H20	VAMP4
miRBase Accession/Entrez ID	MIMAT0014702	8674
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	VAMP-4//VAMP24

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	VAMP4	chr1:171670636(-) A-I      3'UTR chr1:171670657(-) A-I      3'UTR chr1:171670652(-) A-I      3'UTR chr1:171670646(-) A-I      3'UTR chr1:171670638(-) A-I      3'UTR chr1:171670669(-) A-I      3'UTR chr1:171670635(-) A-I      3'UTR chr1:171670662(-) A-I      3'UTR chr1:171670661(-) A-I      3'UTR chr1:171670654(-) A-I      3'UTR chr1:171670625(-) A-I      3'UTR chr1:171670627(-) A-I      3'UTR chr1:171670655(-) A-I      3'UTR chr1:171670682(-) A-I      3'UTR chr1:171670677(-) A-I      3'UTR chr1:171670672(-) A-I      3'UTR chr1:171707206(-) A-I      intronic chr1:171694907(-) A-I      intronic chr1:171707225(-) A-I      intronic chr1:171698948(-) A-I      intronic chr1:171707232(-) A-I      intronic chr1:171703404(-) A-I      intronic chr1:171694893(-) A-I      intronic chr1:171695462(-) A-I      intronic chr1:171695259(-) A-I      intronic chr1:171703406(-) A-I      intronic chr1:171695463(-) A-I      intronic chr1:171686880(-) A-I      intronic chr1:171686782(-) A-I      intronic chr1:171696142(-) A-I      intronic chr1:171696155(-) A-I      intronic chr1:171698835(-) A-I      intronic chr1:171698924(-) A-I      intronic chr1:171686795(-) A-I      intronic chr1:171705925(-) A-I      intronic chr1:171694968(-) A-I      intronic chr1:171695046(-) A-I      intronic chr1:171695288(-) A-I      intronic chr1:171705950(-) A-I      intronic chr1:171695303(-) A-I      intronic chr1:171707220(-) A-I      intronic chr1:171695268(-) A-I      intronic chr1:171705226(-) A-I      intronic chr1:171702566(-) A-I      intronic chr1:171696127(-) A-I      intronic chr1:171703326(-) A-I      intronic chr1:171702540(-) A-I      intronic chr1:171705164(-) A-I      intronic chr1:171696169(-) A-I      intronic chr1:171706034(-) A-I      intronic chr1:171686815(-) A-I      intronic chr1:171694439(-) A-I      intronic chr1:171696115(-) A-I      intronic chr1:171696137(-) A-I      intronic chr1:171698964(-) A-I      intronic chr1:171702598(-) A-I      intronic chr1:171694947(-) A-I      intronic chr1:171696280(-) A-I      intronic chr1:171705203(-) A-I      intronic chr1:171705246(-) A-I      intronic chr1:171696180(-) A-I      intronic chr1:171694558(-) A-I      intronic chr1:171705914(-) A-I      intronic chr1:171686814(-) A-I      intronic chr1:171694927(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	VAMP4	chr1:171670237(-) A-I exon 3'UTR    19478186 chr1:171705164(-) A-G intron -    22484847 chr1:171705246(-) A-G intron -    22484847 chr1:171705914(-) A-G intron -    22484847 chr1:171706034(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	VAMP4	chr1:171669305-171669306(-) m6A 3'UTR       27773535 chr1:171669320-171669321(-) m6A 3'UTR       27773535 chr1:171669332-171669333(-) m6A 3'UTR       27773535 chr1:171669379-171669380(-) m6A 3'UTR       27773535 chr1:171679861-171679862(-) m6A CDS//intron       27773535 chr1:171679869-171679870(-) m6A CDS//intron       27773535 chr1:171679878-171679879(-) m6A CDS//intron       27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	VAMP4	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H20
Interactor2: VAMP4

Evidence Support:

Prediction-Evidence	cRep//miRanda//PITA//Targetscan
Support Database	RepTar//VmiReg