Detail Information

Basic Information:


  VIRBase ID:  

VHID00185176

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H20:           NOTCH2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H20 NOTCH2
miRBase
Accession/Entrez ID		 MIMAT0014702 4853
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - AGS2//HJCYS//hN2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NOTCH2
chr1:120543992(-) A-I      intronic
chr1:120457104(-) A-I      3'UTR
chr1:120591294(-) A-I      intronic
chr1:120591258(-) A-I      intronic
chr1:120591266(-) A-I      intronic
chr1:120591269(-) A-I      intronic
chr1:120591282(-) A-I      intronic
chr1:120543973(-) A-I      intronic
chr1:120543977(-) A-I      intronic
chr1:120590293(-) A-I      intronic
chr1:120590499(-) A-I      intronic
chr1:120590661(-) A-I      intronic
chr1:120590426(-) A-I      intronic
chr1:120590285(-) A-I      intronic
chr1:120590484(-) A-I      intronic
chr1:120590512(-) A-I      intronic
chr1:120533029(-) A-I      intronic
chr1:120547683(-) A-I      intronic
chr1:120532929(-) A-I      intronic
chr1:120532872(-) A-I      intronic
chr1:120572070(-) A-I      intronic
chr1:120547662(-) A-I      intronic
chr1:120532976(-) A-I      intronic
chr1:120590520(-) A-I      intronic
chr1:120540594(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NOTCH2
chr1:120590285(-) A-G intron -    22484847
chr1:120590512(-) A-G intron -    22484847
chr1:120590520(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NOTCH2
chr1:120455696-120455697(-) m6A 3'UTR       24284625
chr1:120455706-120455707(-) m6A 3'UTR       24284625
chr1:120455720-120455721(-) m6A 3'UTR       24284625
chr1:120456475-120456476(-) m6A 3'UTR       24284625
chr1:120456506-120456507(-) m6A 3'UTR       24284625
chr1:120456527-120456528(-) m6A 3'UTR       24284625
chr1:120456563-120456564(-) m6A 3'UTR       24284625
chr1:120456569-120456570(-) m6A 3'UTR       24284625
chr1:120456707-120456708(-) m6A 3'UTR       24284625//24981863
chr1:120456726-120456727(-) m6A 3'UTR       24284625//24981863
chr1:120456731-120456732(-) m6A 3'UTR       24284625//24981863
chr1:120456766-120456767(-) m6A 3'UTR       24284625
chr1:120456809-120456810(-) m6A 3'UTR       24284625
chr1:120456870-120456871(-) m6A 3'UTR       24284625
chr1:120456954-120456955(-) m6A 3'UTR       24284625
chr1:120456991-120456992(-) m6A 3'UTR       24284625
chr1:120457103-120457104(-) m6A 3'UTR       24284625
chr1:120457250-120457251(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr1:120457283-120457284(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr1:120457402-120457403(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085
chr1:120457482-120457483(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:120457603-120457604(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr1:120457620-120457621(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr1:120457714-120457715(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:120457872-120457873(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:120457904-120457905(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:120457975-120457976(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:120457982-120457983(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:120458143-120458144(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr1:120458242-120458243(-) m6A CDS       24284625//24209618//24981863//27773535//22575960
chr1:120458560-120458561(-) m6A CDS       24284625//24209618//27773535//22575960
chr1:120458580-120458581(-) m6A CDS       24284625//27773535//22575960
chr1:120459225-120459226(-) m6A CDS       24284625//24981863//27773535//27371828//22575960
chr1:120459234-120459235(-) m6A CDS       24284625//24981863//27773535//27371828//22575960
chr1:120459252-120459253(-) m6A CDS       24284625//27773535//27371828
chr1:120459310-120459311(-) m6A CDS       27773535
chr1:120460294-120460295(-) m6A CDS       27773535
chr1:120460303-120460304(-) m6A CDS       27773535
chr1:120461071-120461072(-) m6A CDS       27773535
chr1:120462962-120462963(-) m6A CDS       24981863//27773535
chr1:120464377-120464378(-) m6A CDS       24981863
chr1:120464385-120464386(-) m6A CDS       24981863
chr1:120466360-120466361(-) m6A CDS//exon       -
chr1:120466373-120466374(-) m6A CDS//exon       24284625//22575960//22608085
chr1:120466450-120466451(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr1:120466496-120466497(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:120466520-120466521(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:120466574-120466575(-) m6A CDS       24284625//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr1:120466586-120466587(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr1:120467934-120467935(-) m6A CDS       24284625//22608085
chr1:120467942-120467943(-) m6A CDS       24284625//22608085
chr1:120468056-120468057(-) m6A CDS       27371828//22575960
chr1:120468202-120468203(-) m6A CDS       24284625//24981863//27371828//22575960//22608085
chr1:120468320-120468321(-) m6A CDS       24284625//24981863//22575960
chr1:120468349-120468350(-) m6A CDS       24284625//24981863//22575960
chr1:120468397-120468398(-) m6A CDS       24284625//22575960
chr1:120478124-120478125(-) Y CDS//exon       26075521
chr1:120538892-120538893(-) m6A 3'UTR//intron       27773535
chr1:120538971-120538972(-) m6A 3'UTR//intron       27773535
chr1:120543959-120543960(-) Gm intron       16381836
chr1:120544002-120544003(-) Y intron       16381836
chr1:120544050-120544051(-) Am intron       16381836
chr1:120572584-120572585(-) m6A 5'UTR//CDS//exon//intron       27773536
chr1:120596836-120596837(-) m6A 5'UTR//intron       27773536
chr1:120612085-120612086(-) m6A 5'UTR//exon       24284625//27371828//27773536
chr1:120612197-120612198(-) m6A 5'UTR//exon       24284625//24981863//27371828//27773536
chr1:120612237-120612238(-) m6A 5'UTR//exon       24284625//24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NOTCH2
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H20
Interactor2: NOTCH2

Evidence Support:


Prediction-Evidence cRep//miRanda//Rep//Targetscan
Support Database RepTar//VmiReg

Starting a new search, please wait ...