Detail Information

Basic Information:


  VIRBase ID:  

VHID00185032

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H20:           GNG4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsv2-miR-H20 GNG4
miRBase
Accession/Entrez ID		 MIMAT0014702 2786
Organism Human alphaherpesvirus 2 (HSV2) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GNG4
chr1:235763308(-) A-I      intronic
chr1:235763320(-) A-I      intronic
chr1:235763321(-) A-I      intronic
chr1:235763323(-) A-I      intronic
chr1:235718033(-) A-I      intronic
chr1:235744073(-) A-I      intronic
chr1:235765509(-) A-I      intronic
chr1:235794323(-) A-I      intronic
chr1:235718023(-) A-I      intronic
chr1:235775107(-) A-I      intronic
chr1:235785123(-) A-I      intronic
chr1:235783947(-) A-I      intronic
chr1:235785088(-) A-I      intronic
chr1:235791368(-) A-I      intronic
chr1:235730433(-) A-I      intronic
chr1:235744234(-) A-I      intronic
chr1:235713897(-) A-I      3'UTR
chr1:235793011(-) A-I      intronic
chr1:235795041(-) A-I      intronic
chr1:235783908(-) A-I      intronic
chr1:235719246(-) A-I      intronic
chr1:235780176(-) A-I      intronic
chr1:235784657(-) A-I      intronic
chr1:235714791(-) A-I      3'UTR
chr1:235793035(-) A-I      intronic
chr1:235759653(-) A-I      intronic
chr1:235793000(-) A-I      intronic
chr1:235714679(-) A-I      3'UTR
chr1:235719292(-) A-I      intronic
chr1:235735578(-) A-I      intronic
chr1:235793005(-) A-I      intronic
chr1:235794939(-) A-I      intronic
chr1:235714590(-) A-I      3'UTR
chr1:235730437(-) A-I      intronic
chr1:235762895(-) A-I      intronic
chr1:235787639(-) A-I      intronic
chr1:235732906(-) A-I      intronic
chr1:235811073(-) A-I      intronic
chr1:235712319(-) A-I      3'UTR
chr1:235791380(-) A-I      intronic
chr1:235730452(-) A-I      intronic
chr1:235763250(-) A-I      intronic
chr1:235732897(-) A-I      intronic
chr1:235768556(-) A-I      intronic
chr1:235737559(-) A-I      intronic
chr1:235763800(-) A-I      intronic
chr1:235728773(-) A-I      intronic
chr1:235733834(-) A-I      intronic
chr1:235760174(-) A-I      intronic
chr1:235719304(-) A-I      intronic
chr1:235770328(-) A-I      intronic
chr1:235794938(-) A-I      intronic
chr1:235759655(-) A-I      intronic
chr1:235717932(-) A-I      intronic
chr1:235724581(-) A-I      intronic
chr1:235763254(-) A-I      intronic
chr1:235787576(-) A-I      intronic
chr1:235732559(-) A-I      intronic
chr1:235792546(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GNG4
chr1:235717932(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GNG4
chr1:235712578-235712579(-) m6A 3'UTR       27773535
chr1:235712718-235712719(-) m6A 3'UTR       27773535
chr1:235715051-235715052(-) Y 3'UTR       26075521
chr1:235715353-235715354(-) m6A 3'UTR       27773535
chr1:235715448-235715449(-) m6A CDS       27773535
chr1:235813104-235813105(-) m6A 5'UTR//intron       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate GNG4
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):


Interactor1: hsv2-miR-H20
Interactor2: GNG4

Evidence Support:


Prediction-Evidence cRep//miRanda//PITA//Targetscan
Support Database RepTar//VmiReg

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