Basic Information:

  VIRBase ID:  

VHID00184980

  Virus:  

Human alphaherpesvirus 2 (HSV2)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hsv2-miR-H20:  MIMAT0014702          EVC:  NM_001306090     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsv2-miR-H20	EVC
miRBase Accession/Entrez ID	MIMAT0014702	2121
Organism	Human alphaherpesvirus 2 (HSV2)	Homo sapiens
Category	miRNA	mRNA
Alias	-	DWF-1//EVC1//EVCL

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	EVC	chr4:5786500(+) A-I      intronic chr4:5784045(+) A-I      intronic chr4:5797123(+) A-I      intronic chr4:5797129(+) A-I      intronic chr4:5788564(+) A-I      intronic chr4:5788554(+) A-I      intronic chr4:5788343(+) A-I      intronic chr4:5788540(+) A-I      intronic chr4:5796366(+) A-I      intronic chr4:5788531(+) A-I      intronic chr4:5788484(+) A-I      intronic chr4:5788478(+) A-I      intronic chr4:5786378(+) A-I      intronic chr4:5796277(+) A-I      intronic chr4:5796398(+) A-I      intronic chr4:5742087(+) A-I      intronic chr4:5783985(+) A-I      intronic chr4:5786518(+) A-I      intronic chr4:5786555(+) A-I      intronic chr4:5788422(+) A-I      intronic chr4:5788423(+) A-I      intronic chr4:5788439(+) A-I      intronic chr4:5788452(+) A-I      intronic chr4:5788488(+) A-I      intronic chr4:5759427(+) A-I      intronic chr4:5759709(+) A-I      intronic chr4:5722543(+) A-I      intronic chr4:5722544(+) A-I      intronic chr4:5722567(+) A-I      intronic chr4:5722623(+) A-I      intronic chr4:5722638(+) A-I      intronic chr4:5723993(+) A-I      intronic chr4:5724053(+) A-I      intronic chr4:5788569(+) A-I      intronic chr4:5788346(+) A-I      intronic chr4:5740477(+) A-I      intronic chr4:5786587(+) A-I      intronic chr4:5740474(+) A-I      intronic chr4:5740387(+) A-I      intronic chr4:5786515(+) A-I      intronic chr4:5797188(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	EVC	chr4:5721022-5721023(+) m6A CDS       - chr4:5721034-5721035(+) m6A CDS       - chr4:5721083-5721084(+) m6A CDS       - chr4:5746941-5746942(+) m6A CDS       24981863 chr4:5746953-5746954(+) m6A CDS       24981863 chr4:5746965-5746966(+) m6A CDS       24981863 chr4:5746973-5746974(+) m6A CDS       24981863 chr4:5754640-5754641(+) m6A CDS//exon       24284625 chr4:5755532-5755533(+) m6A CDS//exon       - chr4:5755578-5755579(+) m6A CDS//exon       - chr4:5755602-5755603(+) m6A CDS//exon       - chr4:5759821-5759822(+) m6A CDS//intron       25456834 chr4:5759829-5759830(+) m6A CDS//intron       25456834 chr4:5759854-5759855(+) m6A 3'UTR//intron       25456834 chr4:5759866-5759867(+) m6A 3'UTR//intron       25456834 chr4:5759895-5759896(+) m6A 3'UTR//intron       25456834 chr4:5798863-5798864(+) m1A CDS//exon       26863196 chr4:5798889-5798890(+) m6A CDS//exon       - chr4:5800363-5800364(+) m6A CDS//exon       - chr4:5800502-5800503(+) m6A CDS//exon       - chr4:5803519-5803520(+) m6A exon//intron       - chr4:5803679-5803680(+) m6A CDS       24981863 chr4:5803779-5803780(+) m6A CDS       24981863 chr4:5803795-5803796(+) m6A CDS       24981863 chr4:5803811-5803812(+) m6A CDS       24981863 chr4:5806478-5806479(+) m6A CDS       24981863 chr4:5806496-5806497(+) m6A CDS       24981863 chr4:5812079-5812080(+) m6A CDS       24284625 chr4:5812116-5812117(+) m6A CDS       24284625 chr4:5812140-5812141(+) m6A CDS       24981863 chr4:5812155-5812156(+) m6A CDS       24284625//24981863 chr4:5812160-5812161(+) m6A CDS       24284625//24981863 chr4:5812717-5812718(+) m6A CDS       24284625 chr4:5812726-5812727(+) m6A CDS       24284625 chr4:5812770-5812771(+) m6A 3'UTR       24284625//24981863 chr4:5812783-5812784(+) m6A 3'UTR       24284625//24981863 chr4:5812788-5812789(+) m6A 3'UTR       24284625//24981863 chr4:5812862-5812863(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5812893-5812894(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5812970-5812971(+) m6A 3'UTR       24284625//24981863 chr4:5813081-5813082(+) m6A 3'UTR       24284625//24981863//22575960//22608085 chr4:5813094-5813095(+) m6A 3'UTR       24284625//24981863//22575960//22608085 chr4:5813145-5813146(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr4:5813190-5813191(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr4:5813257-5813258(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr4:5813264-5813265(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr4:5813335-5813336(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr4:5813343-5813344(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5813400-5813401(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5813452-5813453(+) m6A 3'UTR       24284625//25456834 chr4:5813460-5813461(+) m6A 3'UTR       24284625 chr4:5813518-5813519(+) m6A 3'UTR       24284625 chr4:5813568-5813569(+) m6A 3'UTR       24284625 chr4:5813576-5813577(+) m6A 3'UTR       24284625 chr4:5813626-5813627(+) m6A 3'UTR       24284625 chr4:5813634-5813635(+) m6A 3'UTR       24284625 chr4:5813679-5813680(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5813687-5813688(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5813733-5813734(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5813739-5813740(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5813747-5813748(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5813805-5813806(+) m6A 3'UTR       24284625//24981863 chr4:5813855-5813856(+) m6A 3'UTR       24284625//24981863 chr4:5813863-5813864(+) m6A 3'UTR       24284625//24981863 chr4:5813913-5813914(+) m6A 3'UTR       24284625//24981863 chr4:5813921-5813922(+) m6A 3'UTR       24284625//24981863 chr4:5813971-5813972(+) m6A 3'UTR       24284625//24981863 chr4:5813979-5813980(+) m6A 3'UTR       24284625//24981863 chr4:5814029-5814030(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5814037-5814038(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5814086-5814087(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5814094-5814095(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5814180-5814181(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5814201-5814202(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5814209-5814210(+) m6A 3'UTR       24284625//25456834//24981863 chr4:5814267-5814268(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr4:5814317-5814318(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr4:5814325-5814326(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr4:5814401-5814402(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr4:5814423-5814424(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr4:5814553-5814554(+) m6A 3'UTR       24284625//24209618//24981863 chr4:5814627-5814628(+) m6A 3'UTR       24284625//24981863 chr4:5814660-5814661(+) m6A 3'UTR       24284625//24209618//24981863//22608085 chr4:5814737-5814738(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr4:5814748-5814749(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr4:5814760-5814761(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr4:5814787-5814788(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr4:5814882-5814883(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr4:5814941-5814942(+) m6A 3'UTR       24284625//24981863//22608085 chr4:5815064-5815065(+) m6A 3'UTR       24284625//24209618 chr4:5815158-5815159(+) m6A 3'UTR       24284625//24209618//24981863 chr4:5815406-5815407(+) m6A 3'UTR       24284625 chr4:5815642-5815643(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr4:5815679-5815680(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr4:5815732-5815733(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr4:5815765-5815766(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr4:5815976-5815977(+) m6A 3'UTR       24284625//24981863//22608085 chr4:5816003-5816004(+) m6A 3'UTR       24284625//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	EVC	Chromatin K562 cells     - Cytoplasm Nasopharyngeal carcinoma cells     20498841 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsv2-miR-H20
Interactor2: EVC

Evidence Support:

Prediction-Evidence	cRep//miRanda//Rep//Targetscan
Support Database	RepTar//VmiReg